Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1253 134 9e-27 seq16777 122 6e-23 seq2384 122 6e-23 seq1685 114 9e-21 seq7153 98.7 7e-16 seq2866 95.1 8e-15 seq16310 82.4 5e-11 >seq1253 Length=553177 Score = 134 bits (148), Expect = 9e-27 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 || || |||||||| ||| |||||||| || ||||| |||||| ||| | || || Sbjct 468768 ACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGACAAAGTACGACCATCTTCC 468709 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 || || ||||||||||| || || || || ||||| | ||| | |||||| ||||| | Sbjct 468708 AACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGA 468649 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 |||||| ||| ||||| | || ||||| ||||| || | ||||||||||| Sbjct 468648 ATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCAACCTCAAGGGTAATAGTTTTC 468589 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || ||||||||||| |||||||| Sbjct 468588 CCGGTTAAAGTTTTCACGAAGATCTGCAT 468560 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| | || | ||||| ||| | ||| |||||| ||||| ||||| |||| Sbjct 470206 TACCACCTCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAG 470147 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || || || ||||||||||| || || || || ||||| | | Sbjct 470146 ACAACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTG 470087 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| ||| || || || || | | ||||| ||||| Sbjct 470086 GGATACCCTCCTTGTCCTGAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCAA 470027 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | ||||| ||||| |||||||||||||||||||| || ||||| Sbjct 470026 CTTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 >seq16777 Length=407 Score = 122 bits (134), Expect = 6e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 95 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 154 Query 20007 GGTAATATTTAGCCTTA 20023 || ||||||||||||| Sbjct 155 GGCGATATTTAGCCTTA 171 >seq2384 Length=1457084 Score = 122 bits (134), Expect = 6e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 6171 CTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGC 6230 || ||||||||||| || || ||||| || || || || ||||||||||| ||| | | Sbjct 811043 CTCAACGTAAATCGGAACGTAGCGGATGCATTTTATCGTTACAAAATGCCTCGCTTGTTG 811102 Query 6231 GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTC 6290 || ||||| || ||||| ||||| || || || |||||||| || |||||| | |||||| Sbjct 811103 GCTAAGGTTGAAGGTAAAGGAAATGGCATAAAGACCGTCATCGTTAACATGACCGAAGTC 811162 Query 6291 GCTAAGGCGCTCGGACGCCC 6310 ||||| ||||| ||||| || Sbjct 811163 GCTAAAGCGCTAGGACGACC 811182 >seq1685 Length=22392 Score = 114 bits (126), Expect = 9e-21 Identities = 81/93 (87%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||| | || |||| ||||||||||||||||||||| || |||||||||| Sbjct 1510 GCCCGTTCCCCTCGCAGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 1569 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| ||| |||||||||||||||||||||||| Sbjct 1570 ATCCATTCGTGCGCGTCACTAATTAGATGACGA 1602 >seq7153 Length=476 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 333 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGACTCAT 274 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||| ||| Sbjct 273 GGTGGTATTTAGCTTTA 257 >seq2866 Length=178446 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 38128 CCTTT-TGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| ||||| ||||||||||| ||| ||| |||| || | ||||| || ||||| Sbjct 176657 CCTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAA 176716 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || | ||||| || |||| || | ||||| ||||| ||||| ||| ||||| Sbjct 176717 ATCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTT 176776 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || ||||| | ||||| || | || || || |||||||| || || || ||| Sbjct 176777 TCGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACG 176836 Query 38307 AATATCTGCATGTT 38320 || |||||||| || Sbjct 176837 AAAATCTGCATTTT 176850 >seq16310 Length=633 Score = 82.4 bits (90), Expect = 5e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 |||||| |||||||||||||| ||| ||||| || || || ||||||| ||| | Sbjct 435 ACGCAATACCAAATGAAGAGTAGACTCTTTTTGGATGTTATAGTCAGACAGCGTACGCCC 494 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGA 38211 ||| |||| ||| ||||| ||||| || || || || ||||||| |||| Sbjct 495 GTCTTCTAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGATCGGGTGGGA 544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334829629450631