Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq2580 89.7 6e-13 >seq2580 Length=1487765 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 15054 AGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCGGCATGATTTTCC 15113 ||||||||||||| || ||| || | || |||||||||||||| || | || Sbjct 176033 AGATTGGCGACAAATTCGCCTCGCGTCACGGACAGAAGGGCACGTGCGGTATCCAATACC 175974 Query 15114 CCCAGGAAGACATGCCCTTTACC-GCGTCAGGCATGACGCCCGACATTATCATCAACCCC 15172 || || |||||||| || || ||| ||| | || |||||||| ||||||||||| Sbjct 175973 GTCAAGAGGACATGCCTTTCACTTGCGA-AGGATTAACTCCCGACATCATCATCAACCCG 175915 Query 15173 AACTGCATCCCGTCCCGCATGACCAT 15198 || ||||||||||||||||||||| Sbjct 175914 CACGCCATCCCGTCCCGCATGACCAT 175889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611171891237600