Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1005 212 8e-50 seq2244 143 3e-29 >seq1005 Length=1646370 Score = 212 bits (234), Expect = 8e-50 Identities = 276/377 (73%), Gaps = 6/377 (2%) Strand=Plus/Plus Query 32643 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 32702 |||||||| ||||| | ||||| ||||||||||| ||||| || |||||| ||| | | Sbjct 377487 AAATGTTTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGT 377546 Query 32703 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 32762 ||||| || || || ||||| ||||| | || |||||||||||||||||||| | ||| Sbjct 377547 TCGTTCGAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCA 377606 Query 32763 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 32822 || || ||||| || || || ||||| || || ||||| || | || ||| || | ||| Sbjct 377607 AAGGAACCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGTAA 377666 Query 32823 ---CCGGCGCTGTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 32878 | | |||| | ||||| || || ||||| || |||||||| |||||||| Sbjct 377667 GGTGCATCTCTGTTACCAATCCATCTCATG-GCCCAGTCAGCCTTCTTCGCAACACAAGG 377725 Query 32879 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 32938 ||||||||| | ||| || || || | | ||||| | ||| || | || || || Sbjct 377726 CATTGTCTCAACAGCGTTGAAAAGTTTCATCCTTTCAGCAGAATCCTTGATGTAGGTTTC 377785 Query 32939 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 32998 ||| || || || ||||| || || || || ||||| ||||| ||||| || || ||||| Sbjct 377786 AATTAACAGGCTGTACATCTCTGAGTGGATATTTTCCATGGCTATTTGGAAACCATAGAA 377845 Query 32999 GCATCTAGCCTC-GGTA 33014 || | |||||| |||| Sbjct 377846 ACAGCGAGCCTCAGGTA 377862 >seq2244 Length=477090 Score = 143 bits (158), Expect = 3e-29 Identities = 178/241 (74%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 62980 TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGG 63039 ||||||||| ||| ||||| ||||||||| ||| | | | || |||||||||| ||| Sbjct 404239 TGTATACAAAGCTTCAAACTCTTCTCCCCAAGCATCGGCTAAACCCGGACATTCATTCGG 404298 Query 63040 ACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCC 63098 |||||| | |||||||||||||| | ||| || || | ||| || ||||||||||||| Sbjct 404299 ACACATAAGAGACCACTCTCCGTC-TGATTCAACGCGCTGCATGAAAAGATCAGGAATCC 404357 Query 63099 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63158 ||||||| ||| | || | | | | || || ||||| ||||||||||| |||| Sbjct 404358 AAAGAGCGTAAAACAAGTCACGTGCACGGTTCTCTTCTTTTCCGGTATTCTTTTTTAGAT 404417 Query 63159 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63218 | || || | | | ||| |||||||| ||||| | ||| || || | | |||| || | Sbjct 404418 CAAGAAATTCAAATACATCCGAATGCCATGGTTCTAGGTAAATTGCAAAAGCTCCTGGAC 404477 Query 63219 G 63219 | Sbjct 404478 G 404478 Score = 102 bits (112), Expect = 1e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 62477 TCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGG 62536 |||||||| ||||||||||| |||||||| || | ||||||||| ||||||||| | Sbjct 403526 TCTAATGCGCCGTAATAAATCGTTTCGAAAATTTGCTTATTTAGCAGTTGCGCTTCTTCG 403585 Query 62537 CTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCG 62596 |||||||| ||||| | || ||||| || || || || |||||||| ||||| || Sbjct 403586 CTATCAAACGGATAGCGCATTAGGATAAAAGCATCAGCCAAGCCTTGAACTCCAATTCCT 403645 Query 62597 ATAGGTCTATG 62607 || || | ||| Sbjct 403646 ATCGGACGATG 403656 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 63821 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880 ||||| ||||||||||| ||||| || || ||||| | ||| || || || |||||||| Sbjct 405376 TTTTTAGTTTCTTTGTGAAGATTCGAAACAGCTATGCGAGCAGCCAGGATTGCATAATCA 405435 Query 63881 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 63940 ||||| | ||||| || || || |||| || || ||| | || | ||| || ||| Sbjct 405436 GGATGCTTAGTAGTCATTGTAGCAGCAGTTTCTGCAGCAAGATTATCAAGTTCAACAGTT 405495 Query 63941 GTTACACCATTATATATTCCTTGGATAACCTTCATAGCTAT 63981 || |||||| ||| | || | ||||| ||||||| ||| Sbjct 405496 GTCACACCAGGATAGAGGCCATTTATAACTTTCATAGTTAT 405536 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 61951 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 62010 |||| |||| ||||| || || || |||| || ||||||||||||||||| || || | Sbjct 402771 ATAATTCGGTTCTGCAATGTGTATGTTCAATGACTGACTTTGATCGATGAAAGCACCACG 402830 Query 62011 GTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 62064 || |||||||| || ||||| |||||||||||||| | |||||||| Sbjct 402831 ATCAGCAGCCATCTTAATAATGACGCGCTGTGGAATTTCCCATACTGTTTTATA 402884 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 ||||| ||||| | ||| || || ||||| || || ||||| || ||||| || | Sbjct 403966 ATCTCCGTGCACAAATTGCTGCATTTGATCGTGCCCAAATTCTGCTGATTTGATTTGCGG 404025 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTAT 62916 ||||| ||||| ||||| || ||| | ||||| || ||||||||||| ||||| || Sbjct 404026 TTACATGCATCTTTATATAGGATGTACGGAGTTCCCGTTTCAATCTGGGATTCGAT 404081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633403884559600