Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1253 134 1e-26 seq15804 102 7e-17 >seq1253 Length=553177 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| ||||| || ||| ||||||| | || || ||| | || Sbjct 467956 AATGCAGATCTTTGTCAAGACATTGACTGGCAAAACCATCACTCTTGAGGTTGAGCCTTC 468015 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||||| ||| | ||| | || | ||| || || ||||| ||||||||||| | Sbjct 468016 TGACACTATTGAGAATGTTAAGGCCAAGATTCAA-GATAAGGAAGGTATTCCACCTGATC 468074 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | || ||||| ||||| || | || |||| || ||| || |||||||| Sbjct 468075 AGCAACGTTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTTTGTCCGATTACA 468134 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || || || ||||| || || ||||| || || | || |||||||||| Sbjct 468135 ACATCCAGAAGGAATCAACTCTCCATTTGGTTCTGCGCCTCAGAGGAGGAA 468185 Score = 125 bits (138), Expect = 6e-24 Identities = 169/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||||| ||||| ||| | || || | || || ||| | || Sbjct 468560 ATGCAGATCTTCGTGAAAACTTTAACCGGGAAAACTATTACCCTTGAGGTTGAGCCATCG 468619 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| |||| | ||||||| ||| ||||| ||||| ||||| || || Sbjct 468620 GATACCATCGAAAATGTCA---AGGCAAAAATTCAA-GACAAGGAAGGCATTCCCCCAGA 468675 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || |||||||| || || || ||||||| ||| ||| || |||||| Sbjct 468676 TCAGCAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGTACTTTGTCCGATTA 468735 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||||||||| || || || || ||||| ||| | || | || |||| Sbjct 468736 TAACATTCAAAAAGAGTCGACTCTTCACTTAGTTCTACGTCTCCGCGGCGGAA 468788 Score = 118 bits (130), Expect = 9e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || ||| | ||||| ||||||| || | || Sbjct 470206 ATGCAGATCTTTGTCAAGACGTTGACTGGGAAAACTATCACGCTCGAAGTTGAACCTTCA 470265 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| |||||| || || ||||| ||||| || ||||| Sbjct 470266 GACACAATCGAAAATGTTAAGGCTAAAATCCAAGATAAGGAAGGTATTCCTCCCGACCAG 470325 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || |||||||| || | || |||| ||| || | || || || Sbjct 470326 CAACGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGTACGCTTTCAGACTATAAC 470385 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 |||||||||||||| || || |||||||| || | || | ||||||| ||| Sbjct 470386 ATTCAAAAAGAATCTACCCTTCATTTAGTTTTACGTCTTCGTGGAGGAATTTA 470438 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| || ||||| ||||||||||| |||||||||| || || ||||| ||||||| || Sbjct 469456 AGGTATCCCACCCGACCAACAGCGACTTATTTTTGCTGGAAAGCAATTGGAAGATGGACG 469515 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 || | ||| ||||||||||| ||||| || || || ||||| || | | || | Sbjct 469516 AACGCTATCCGACTACAATATTCAGAAAGAGTCTACACTGCATTTGGTATTGCGTCTGCG 469575 Query 25220 AGGAGG 25225 |||||| Sbjct 469576 AGGAGG 469581 >seq15804 Length=1078 Score = 102 bits (112), Expect = 7e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| || |||||||| || ||| | | || |||||||||||||| || || |||| ||| Sbjct 626 AGGTATCCCACCTGATCAGCAGAGATTAATCTTTGCCGGCAAACAGTTGGAGGATGGTCG 567 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || |||||||||||| ||||| |||||||| ||||||| ||||| Sbjct 566 TACTTTGTCCGATTACAATATCCAAAAGGAATCCACCTTACATTTGGTGCT 516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433175896590815