Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1005 163 3e-35 seq1614 91.5 2e-13 seq687 91.5 2e-13 seq3257 86.0 7e-12 seq6498 82.4 8e-11 >seq1005 Length=1646370 Score = 163 bits (180), Expect = 3e-35 Identities = 260/369 (70%), Gaps = 8/369 (2%) Strand=Plus/Plus Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 ||| |||| | ||| ||||| ||| || | |||||| |||| || |||| || || Sbjct 377493 TTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGTTCGTTC 377552 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 |||||| | ||||| | || ||||| || || ||||||||||||| |||||| | Sbjct 377553 GAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCAAAGGAA 377612 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 ||||| |||||||| |||||||| || ||||| || ||||| | ||| || ||| Sbjct 377613 CCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGTAAGGTGC- 377671 Query 93260 GAATTACTG---CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT 93316 || ||| | |||||| | | ||||| || || || ||| || |||||| | | Sbjct 377672 --ATCTCTGTTACCAATCCATCTCATGGCCCAGTCAGCCTTCTTCGCAACACAAGGCATT 377729 Query 93317 GTTTCGATAGCGTTAAATAG-GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGAT 93375 || || | |||||| || || | ||| | || | ||||| ||||| || || || Sbjct 377730 GTCTCAACAGCGTTGAAAAGTTTCATC-CTTTCAGCAGAATCCTTGATGTAGGTTTCAAT 377788 Query 93376 TAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435 |||||| ||||| || || |||| ||| ||||| || |||||||| || |||||||| Sbjct 377789 TAACAGGCTGTACATCTCTGAGTGGATATTTTCCATGGCTATTTGGAAACCATAGAAACA 377848 Query 93436 TCTAGCTTC 93444 | ||| || Sbjct 377849 GCGAGCCTC 377857 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510 ||| ||||| |||| ||| | || || ||||||||||| || || ||||| ||||| || Sbjct 377920 CTGGACTTCCTGAGCAAACCGTTCAACAAGATTTTCATTTACGATTCCATCAGATGCAGC 377979 Query 93511 aaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATC 93570 |||||| || || | ||| || ||||| || |||| | || ||| |||||||| || Sbjct 377980 AAAAAATGCTAAGACATGAGAAATGAAATGCTTTTCATTAGGTTGAAGTTTATCCCAGTC 378039 Query 93571 G 93571 | Sbjct 378040 G 378040 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || ||||| || |||||||| |||||||||| || ||||| |||||||||||||| | | Sbjct 378120 TTGGAAAGGTCAACTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTGTACATTTGC 378179 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678 || || || ||||| || || || || | ||||| || Sbjct 378180 CAAATATCATGATACTGGATAGGGAACAACACAAATCG 378217 >seq1614 Length=4212 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/79 (89%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGAG-CGTG 126325 ||||||||||||||||| |||||||||||| |||||||||||| || | ||| |||| Sbjct 3352 CAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCTCTGTATAGAGACGTG 3294 Query 126326 GGTTCGAACCCCACACCTG 126344 ||||||||||||||||||| Sbjct 3293 GGTTCGAACCCCACACCTG 3275 >seq687 Length=2295375 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/80 (88%), Gaps = 5/80 (6%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT---TCCCTCGGGAGCGT 126324 ||||||||||||||||| |||||||||||| |||||||||||| | | | | || ||| Sbjct 551974 CAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCTCTGCATAGAGA-CGT 551917 Query 126325 GGGTTCGAACCCCACACCTG 126344 |||||||||||||||||||| Sbjct 551916 GGGTTCGAACCCCACACCTG 551897 >seq3257 Length=729757 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/85 (85%), Gaps = 5/85 (6%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT---TCCCTCGGGA 126320 || |||||||||||||||||| |||||||||||| ||||| |||||| | | | | || Sbjct 689044 CAATCAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGTTCTGGTCTCTACATAGAGA 688986 Query 126321 GCGTGGGTTCGAACCCCACACCTGA 126345 ||||||||||| |||||||||||| Sbjct 688985 -CGTGGGTTCGATCCCCACACCTGA 688962 >seq6498 Length=983 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/81 (85%), Gaps = 3/81 (4%) Strand=Plus/Minus Query 126267 TCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGAG-CGT 126324 |||||||||||||| ||| |||||||||||| ||||| |||||| || | ||| ||| Sbjct 673 TCAGGTTGGCCGAGAGGT-TAAGGCGCCAGACTTAAGTTCTGGTCTCTATATCGAGACGT 615 Query 126325 GGGTTCGAACCCCACACCTGA 126345 |||||||| |||||||||||| Sbjct 614 GGGTTCGATCCCCACACCTGA 594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556660323151240