Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq13959 95.1 2e-14 seq3375 91.5 3e-13 seq3310 89.7 1e-12 seq2490 87.8 4e-12 seq2140 87.8 4e-12 seq626 87.8 4e-12 seq21530 86.0 1e-11 seq341 86.0 1e-11 seq26928 84.2 4e-11 >seq13959 Length=523 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 289 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 230 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 229 AGCCCCACGTTGGGC 215 >seq3375 Length=702870 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 242193 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 242134 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 242133 CCCCACGTTGGGC 242121 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 98883 AGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 98824 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 98823 CCCCACGTTGGGC 98811 >seq3310 Length=163375 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 54862 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 54803 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 54802 CCCACGTTGGGC 54791 >seq2490 Length=231330 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 205868 AGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 205927 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 205928 CCCCACGTTGGGC 205940 >seq2140 Length=307830 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 153356 AGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 153297 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 153296 CCCCACGTTGGGC 153284 >seq626 Length=1369339 Score = 87.8 bits (96), Expect = 4e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 218648 AAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACG 218707 ||||||| ||||| || ||||| |||||| || | ||| || | |||||||||| Sbjct 256030 AAGAAATCAAGGTTGCCCAGTTAGCTGGTTCAGTGGCGGAACACTCAGCTTACCATCACG 255971 Query 218708 GTGA-GCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAAC 218766 |||| ||| | || ||| | || |||| | || || || | ||||| ||| Sbjct 255970 GTGAAGCATCTT-TGATGGGAACAATCATAGGTTTAGCTCAAGATTTCGTGGGATCCAAC 255912 Query 218767 AACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTA 218811 ||||| || ||| |||| |||||||||||||||||| |||||||| Sbjct 255911 AACATAAATTTGTTGCTTCCCAACGGTCAGTTTGGTACTCGTCTA 255867 >seq21530 Length=238 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| || |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 103 GCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 162 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 163 CCCACGTTGGGC 174 >seq341 Length=367662 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||| ||||||| Sbjct 37330 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGCTTCGAGC 37271 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 37270 CCCACGTTGGGC 37259 >seq26928 Length=347 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| || |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 79 GCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 138 Query 142564 CCCACATCGGG 142574 ||||| | ||| Sbjct 139 CCCACGTTGGG 149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027457515051641