Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1253 179 7e-40 seq2866 120 6e-22 seq512 113 8e-20 seq16310 102 2e-16 seq15804 84.2 4e-11 >seq1253 Length=553177 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| ||||| || || | || ||||| || || ||||||||||| ||||||||||||| Sbjct 468788 TTCCGCCGCGGAGACGTAGAACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGG 468729 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | || | |||||||| |||||||| ||||| || ||||| | || || || || | Sbjct 468728 ACAAAGTACGACCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGG 468669 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||||||||||||||||||||| ||||||||||| |||||||| || | || || | Sbjct 468668 GAATGCCTTCCTTGTCTTGAATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCAA 468609 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | ||| || ||||| || || | || || ||||| |||||||| Sbjct 468608 CCTCAAGGGTAATAGTTTTCCCGGTTAAAGTTTTCACGAAGATCTGCAT 468560 Score = 154 bits (170), Expect = 3e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | ||||||| ||||| || || || || || || |||||||| ||||||| Sbjct 468185 TTCCTCCTCTGAGGCGCAGAACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGG 468126 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | || | ||||| || | |||||| || || || || | | ||| || || |||| Sbjct 468125 ACAAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTG 468066 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| |||||||| ||||||||||| ||||| || ||| || ||||| | | || | Sbjct 468065 GAATACCTTCCTTATCTTGAATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAA 468006 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467 | || | ||||||||||| || || | |||||||| || ||||||||| |||| Sbjct 468005 CCTCAAGAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATCTGCATTTTGCT 467951 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || ||||||||||| || || || |||||||| || || || || ||||| Sbjct 469581 CCTCCTCGCAGACGCAATACCAAATGCAGTGTAGACTCTTTCTGAATATTGTAGTCGGAT 469522 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| || ||||| || || || || |||| |||||||||||||| Sbjct 469521 AGCGTTCGTCCATCTTCCAATTGCTTTCCAGCAAAAATAAGTCGCTGTTGGTCGGGTGGG 469462 Query 68355 ATGCCT 68360 || ||| Sbjct 469461 ATACCT 469456 Score = 96.9 bits (106), Expect = 6e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || ||||||||||| || ||||||||||| || Sbjct 469976 CCACCTCGAAGACGTAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTATAATCCGAC 469917 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| |||| |||||| || ||||| || || | ||| || ||||| ||| Sbjct 469916 AACGTACGTCCATCCTCTAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCGGGCGGA 469857 Query 68355 ATGCCT 68360 || ||| Sbjct 469856 ATACCT 469851 >seq2866 Length=178446 Score = 120 bits (132), Expect = 6e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 |||| || ||||| ||||| || | || | || ||||| | ||| || || || || | Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | | | ||| |||||||| ||||| |||||||||||||| || || ||||| || | Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTT 176777 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 ||||||| || | | || || || | ||||||||| || ||||| | ||||| |||| Sbjct 176778 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGA 176837 Query 68452 ATATCTGCATTATG 68465 | ||||||||| || Sbjct 176838 AAATCTGCATTTTG 176851 >seq512 Length=3718170 Score = 113 bits (124), Expect = 8e-20 Identities = 154/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 268535 TTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTT 268594 |||||||| | ||| | ||||| || |||| || ||||| || ||||||||||| || Sbjct 2863453 TTTTGAGGTACCTCTTGCACTTTTCCGTAGAGTTCTGAGGTAGAAGCTTGGTAGAATTTA 2863512 Query 268595 GTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCA 268654 | ||| || ||||| || | |||| ||| || || | || |||||||||| || Sbjct 2863513 ACAGATTTCTCCAGACCACAAGTACGGACTGCATCAAGAATTCGTAGAGTTCCCAATGCA 2863572 Query 268655 TCCACGTCCGCTGTATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCC 268714 || || | |||||||| || | || || || || || | |||||||||||||| ||| Sbjct 2863573 TCAACATTGGCTGTATATTCAGCCAAATCAAAAGAAACTTTTACATGGCTCTGGGCACCC 2863632 Query 268715 AGGTTATAAACCTCATCCGGTTTGACCTGCTGCA 268748 || || || | ||| ||||||| || ||||| Sbjct 2863633 AGATTGTATATTTCAGTTGGTTTGA-CTTCTGCA 2863665 >seq16310 Length=633 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || ||||||||||| || || || |||||||||||||||||||| || || Sbjct 424 CCTCCCCGTAGACGCAATACCAAATGAAGAGTAGACTCTTTTTGGATGTTATAGTCAGAC 483 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||| ||||||| ||||| || || || || || | || || |||||||| Sbjct 484 AGCGTACGCCCGTCTTCTAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGATCGGGTGGG 543 Query 68355 ATGCCT 68360 || ||| Sbjct 544 ATACCT 549 Score = 93.3 bits (102), Expect = 8e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || ||||| ||||| || | ||| |||||||| || ||||| || ||||| Sbjct 22 CCTCCACGCAGACGCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTGTAGTCGGAC 81 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||||||| || ||||| || || || || || | || ||||||||||| Sbjct 82 AACGTACGCCCATCTTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCGGGTGGG 141 Query 68355 ATGCCT 68360 || ||| Sbjct 142 ATCCCT 147 >seq15804 Length=1078 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||| || ||||||| ||| ||||| ||||||||||| | | || ||||| Sbjct 765 CCTTCCTTATCCTGAATCTCTGCTTTGACATTTTCGATGGTGTCAGAAGGCTCAACTTCA 824 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||| |||||||| ||||| ||||| | ||||| |||||||| Sbjct 825 AGGGTAATGGTTTTACCCGTTAGGGTTTAAACGAAGATCTGCAT 868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921290604415720