Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1253 127 2e-24 seq16310 93.3 4e-14 >seq1253 Length=553177 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| || || | | |||||| || | || || |||||||||||||| |||||| Sbjct 468789 ATTCCGCCGCGGAGACGTAGAACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCG 468730 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||||| |||||| | || || || || ||||||||||||| || || || Sbjct 468729 GACAAAGTACGACCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGG 468670 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||| ||| || | | ||| | ||| || | | || Sbjct 468669 GGAATGCCTTCCTTGTCTTGAATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCA 468610 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| ||||| | |||||| || || |||||||| Sbjct 468609 ACCTCAAGGGTAATAGTTTTCCCGGTTAAAGTTTTCACGAAGATCTGCAT 468560 Score = 120 bits (132), Expect = 3e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 114151 AAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 |||| || ||||| || | ||||||||||| | |||||||||||||||||||| || | Sbjct 470437 AAATTCCTCCACGAAGACGTAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGT 470378 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | | |||||| ||| ||||| || || || ||| |||| ||||| || ||||| | Sbjct 470377 CTGAAAGCGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGG 470318 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGAT 114329 ||||||| ||||| || || || ||| | ||| | | ||| | ||||| | | | Sbjct 470317 GAGGAATACCTTCCTTATCTTGGAT-TTTAGCCTTAACATTTTCGATTGTGTCTGAAGGT 470259 Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || | || | ||||| || |||| || || ||||| |||||||| Sbjct 470258 TCAACTTCGAGCGTGATAGTTTTCCCAGTCAACGTCTTGACAAAGATCTGCAT 470206 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 || ||| ||||| | || ||||| || || |||||||||||| || |||||| ||| Sbjct 468169 CAGAACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGGCCATC 468110 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||||| || || ||||| |||| | ||| || || || || ||||| ||||| || || Sbjct 468109 CTCAAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGGAATACCTTCCTTATC 468050 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 |||||| || | | |||| ||||| | | || || || | || | || Sbjct 468049 TTGAATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAACCTCAAGAGTGATGGT 467990 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||| |||| || || ||||| |||||||| Sbjct 467989 TTTGCCAGTCAATGTCTTGACAAAGATCTGCAT 467957 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || |||| | || | ||| | ||||| || || ||||||||||| || Sbjct 470207 ATACCACCTCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCA 470148 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| |||||| | || || || || ||||||||||||| || || || Sbjct 470147 GACAACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGT 470088 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| |||||| ||||| | ||| | ||| || | | ||| Sbjct 470087 GGGATACCCTCCTTGTCCTGAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCA 470028 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || |||| ||||| || || || ||||| Sbjct 470027 ACTTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 >seq16310 Length=633 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || ||||| | |||||| ||||| ||||||||||| ||| Sbjct 19 ATACCTCCACGCAGACGCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTGTAGTCG 78 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| |||||| | ||| || ||||| | || |||||||| ||||| || Sbjct 79 GACAACGTACGCCCATCTTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCGGGT 138 Query 114273 GGAATGCCT 114281 || || ||| Sbjct 139 GGGATCCCT 147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419986927705212