Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1005 122 2e-22 >seq1005 Length=1646370 Score = 122 bits (134), Expect = 2e-22 Identities = 250/368 (68%), Gaps = 8/368 (2%) Strand=Plus/Minus Query 42500 TGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTA 42559 |||||| ||||| ||||| || ||||| |||||||| || || | ||||| ||| |||| Sbjct 377858 TGAGGCTCGCTGTTTCTATGGTTTCCAAATAGCCATGGAAAATATCCACTCAGAGATGTA 377799 Query 42560 CGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAA 42616 | | ||| | | | || |||||| |||| | | || | | || ||||| Sbjct 377798 CAGC---CTGTTAATTGAAACCTACATCAAGGATTCTGCTGAAAGGATGAAACTTTTCAA 377742 Query 42617 GGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGA 42676 || | ||||| ||||| || | ||||||||| |||||||| | | ||||| | Sbjct 377741 CGCTGTTGAGACAATGCCTTGTGTTGCGAAGAAGGCTGACTGGGCCATGAGATGGATTGG 377682 Query 42677 GAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTT 42736 | || ||| | | | | || || | ||||| ||| | || || || ||||| || Sbjct 377681 TAACAGAGATGCACCTTACAGTGAAAGAATTGTAGCTTTTGCTGCTGTGGAAGGCATATT 377622 Query 42737 CTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGAC 42795 ||||| || |||| || | || || ||||| || || |||| | |||||| |||| Sbjct 377621 TTTCTCTGGTTCCTTTGCTGCAATATTTTGGCTTAAAAAGCGAGGTTT-GATGCCAGGAC 377563 Query 42796 TCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCC 42855 | || |||||||||||||| || || || || || ||||| | || ||||| ||| Sbjct 377562 TGACATTCTCGAACGAACTGATTTCTAGAGATGAAGGTCTGCACTGCGATTTTGCATGCG 377503 Query 42856 TCCTGTTC 42863 | ||||| Sbjct 377502 TTATGTTC 377495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943999226083760