Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_009237.1 Length=37446 Score E Sequences producing significant alignments: (Bits) Value seq7916 383 4e-102 >seq7916 Length=535 Score = 383 bits (424), Expect = 4e-102 Identities = 355/448 (79%), Gaps = 4/448 (1%) Strand=Plus/Plus Query 1570 ATCGTCGAGCTGCGCAACGTGCCTTTCCGGCAGCAGGAACAAATCGCTTTCTACCTGCTC 1629 ||| | || |||||||||||||| ||||||||||| || || || ||||||||| | Sbjct 1 ATCCTGGAACTGCGCAACGTGCCCTTCCGGCAGCAAGAGCAGATTTGCTTCTACCTGTTG 60 Query 1630 GACCGGCTCCCGCGCTTCACGGGCGGTGCCTTCGATGCGCGCGGCAACGGCCAGTACCTC 1689 |||||||| ||| ||||| |||||| || |||||| |||||||||| ||||||| |||| Sbjct 61 GACCGGCTGCCGAACTTCATGGGCGGGGCTTTCGATTCGCGCGGCAATGGCCAGTTCCTC 120 Query 1690 GCCGAGATCGCCATGCAGCGCTACGGCGCGTCGCGCATCCAGCAAGTGATGCTGTCGGAG 1749 || ||| |||||||||| ||||| || ||||| |||||||| || |||||| | ||| Sbjct 121 GCTGAGTACGCCATGCAGAAGTACGGTGCATCGCGGATCCAGCAGGTCATGCTGACCGAG 180 Query 1750 TCGTGGTATCGCGAGCACATGCCGCCCGTGAAGGCAGCATTCGAAGACGGCACGATC--G 1807 | ||||||||||||||||||||||| || ||||| || | |||||||| ||||| | Sbjct 181 GCTTGGTATCGCGAGCACATGCCGCCGGTCAAGGCTGCGCTGGAAGACGG--CGATCTGG 238 Query 1808 ACGGCCTTCCGAAGGATGCAGACGTGCTCGCCGACCTGCGCGCCGTCCAGGTCATCAAGG 1867 | ||||| ||||||||||| |||||| | || ||||| || |||||||||||||||| Sbjct 239 ATGGCCTGCCGAAGGATGCTGACGTGTTGGCTGACCTTCGACTGGTCCAGGTCATCAAGG 298 Query 1868 GCGTGCCGCGCATCCCGGACGTGCGCACGACCGGCCAGGACGACGGCAAGCGCCACGGCG 1927 ||||||| ||| | || ||||| |||||||| || | ||| | || ||||| ||||||| Sbjct 299 GCGTGCCCCGCGTTCCAGACGTTCGCACGACAGGTGAAGACAAGGGGAAGCGACACGGCG 358 Query 1928 ACGCTGCCGTTGCGGTGGCTCTGGCGTATTACGCAAGCCGTGAACTGAACAAGGGACCGG 1987 ||| || || || || || || |||| | |||||||| || | |||||||| |||| Sbjct 359 ACGTCGCTGTGGCTGTAGCGCTTGCGTTCTTTGCAAGCCGAGAGATCAACAAGGGGCCGG 418 Query 1988 TGACCGCCAAGTCGCGGCGGCGCCGCTC 2015 | ||||||||| |||| ||||||||| Sbjct 419 TCACCGCCAAGAGCCGGCCGCGCCGCTC 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119664659263296