Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq2190 91.5 1e-13 >seq2190 Length=2111488 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 |||||||| || ||||| | ||| | || | | ||||||||||| |||||||| ||| Sbjct 1172805 AGACCAGTGACGTGAGCTATCATGCATGTCAGCAAAGAATAGCTGGCTATGTTAAAGGGA 1172746 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || || |||||||| || | || || ||||||| || || || || ||||| | ||| Sbjct 1172745 ACACCTAAACCCATATCAGCAGATCTTTGATACATTTGGCAAGACAGTTCACCATTTGCT 1172686 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGG 20416 ||||| || || || | || || || || | |||||| | | || ||| || Sbjct 1172685 ACATAGAACTGGGCCAAGCAATGGCACGGTGGTAACGCCATTAGTGGTAATGCCGTTGGA 1172626 Query 20417 TTCCACGCACACATAATGATTCTTCTATCGTGCGGATT 20454 ||||| || | ||| || | || ||||| ||||| Sbjct 1172625 TTCCAAGCTGTAAGAATCATGCGTCGATCGTCAGGATT 1172588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441213900274840