Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1685 102 6e-17 seq1253 100 2e-16 seq16310 89.7 4e-13 seq1952 86.0 5e-12 >seq1685 Length=22392 Score = 102 bits (112), Expect = 6e-17 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||| Sbjct 8344 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGAGTG-GATCTAAGGAA 8402 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCG 114423 ||| ||||||| |||||||||||||| ||| ||| Sbjct 8403 CCATAACTGATTTATTGAGCCATTCGCGGTTTCG 8436 Score = 102 bits (112), Expect = 6e-17 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||| Sbjct 8344 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGAGTG-GATCTAAGGAA 8402 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCG 115620 ||| ||||||| |||||||||||||| ||| ||| Sbjct 8403 CCATAACTGATTTATTGAGCCATTCGCGGTTTCG 8436 >seq1253 Length=553177 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||| || || ||||||||||| | || |||||||||||||||||| || | Sbjct 470205 ACCACCTCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAGA 470146 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| ||| | || ||||| ||||| |||||||| || || ||||||||||| || Sbjct 470145 CAACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGG 470086 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | | ||| |||||| | | | || |||| | || | |||| | | ||| Sbjct 470085 GATACCCTCCTTGTCC-TGAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCAA 470027 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||||| || || ||||| || || | |||||||| ||||||||||| Sbjct 470026 CTTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 >seq16310 Length=633 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | ||| |||| ||||| ||| | ||| ||| |||||||||||||| || | Sbjct 21 ACCTCCACGCAGACGCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTGTAGTCGGA 80 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| ||| | || ||||||||||| || ||||| ||||| |||||||| || Sbjct 81 CAACGTACGCCCATCTTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTC 134 >seq1952 Length=5232 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/234 (69%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 37899 ATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACCGCGCTCAACTAC 37958 ||||| ||| ||| ||||||||||||||| | || || || | || |||| | || Sbjct 316 ATGTACTGGGCCAAAAAAATTTTGGAATGGACGGA-GACGCCC-GAAGAAGCTCTAAGAC 373 Query 37959 --GCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACGTCG 38016 || || ||||| || |||| ||||| || || || | || || | ||||| || | Sbjct 374 TTGCTATATATCTGAACGATAGATACAGTTTAGATGGAAGAGACCCTAGTGGTTATGTTG 433 Query 38017 GCTGTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCG----CGAGATTCCCATT 38072 ||||| ||||||| || || || | || || | | |||| |||||| || Sbjct 434 GCTGTATGTGGTCCATCTGTGGTATTCATGACATGGGCTGGAAGCAACGAGATG----TT 489 Query 38073 TACGGCAAGATTCGGTACATGAACTACAACGGATGTGTTAGGAAGTTTAATGTT 38126 | ||| |||||||| |||||||||||||| || ||| | || ||| ||||| Sbjct 490 TTCGGAAAGATTCGCTACATGAACTACAAAGGCTGTCAACGCAAATTTGATGTT 543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396923026258402