Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1253 131 4e-25 seq2866 96.9 8e-15 seq626 96.9 8e-15 >seq1253 Length=553177 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| ||| || ||||| | || || || || || || ||||| | Sbjct 470204 CCACCTCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 470145 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| || || ||||| || || ||||| || ||||| |||||||| ||| |||| Sbjct 470144 AACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGG 470085 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || ||||| ||||||||||| | ||| | ||| ||| Sbjct 470084 ATACCCTCCTTGTCCTGAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCAACT 470025 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || ||||| |||| || || ||||| || ||||| Sbjct 470024 TCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || |||||||| | ||||| || || || || | || || || ||||| Sbjct 470397 TTCTTTTTGAATGTTATAGTCTGAAAGCGTACGACCATCCTCAAGCTGCTTGCCGGCGAA 470338 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||||||| || || || || ||||| ||||| |||||||| || || || || Sbjct 470337 GATCAGACGTTGCTGGTCGGGAGGAATACCTTCCTTATCTTGGATTTTAGCCTTAACATT 470278 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | ||| |||||||||||||| || ||||| |||| |||||||| Sbjct 470277 TTCGATTGTGTCTGAAGGTTCAACTTCGAGCGTGATAGTTTTCCCAGTCAACGTCTTGAC 470218 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 470217 AAAGATCTGCAT 470206 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||||||||||||||| || || || ||||| |||| ||| | || || Sbjct 469689 ATACCTTCTTTATCCTGGATTTTGGCCTTAACATTTTCAATAGTATCAGAAGGCTCCACC 469630 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||| |||| ||| |||||||| |||||||| Sbjct 469629 TCAAGGGTGATGGTTTTCCCCGTCAAAGTTTTGACGAAAATCTGCAT 469583 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| ||||| || || ||||| ||||||||||| |||| || || ||| ||||| Sbjct 468891 CCTTCCTTATCTTGAATCTTCGCCTTCACGTTTTCAATAGTGTCAGACGGTTCAACTTCA 468832 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||||||||| || || |||| || ||||| || || |||||| Sbjct 468831 AGCGTGATCGTTTTGCCTGTCAAGGTTTTGACAAAAATTTGCATT 468787 >seq2866 Length=178446 Score = 96.9 bits (106), Expect = 8e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| || || || || || | | |||||||||||||| | ||||| || || || | Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 ||| ||| || || || || ||||| || || ||||||||||| || || |||| Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTT 176777 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || | ||| | || || || || ||||| ||||| || || | ||||| |||| Sbjct 176778 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGA 176837 Query 288464 ATATCTGCATTATGTT 288479 | ||||||||| |||| Sbjct 176838 AAATCTGCATTTTGTT 176853 >seq626 Length=1369339 Score = 96.9 bits (106), Expect = 8e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 325058 CCCTTGTACCACGGTTTCATTTCGACGAGGTCCTCTCCAGATATCAAACGCTTCACATTA 325117 |||||| ||||||| | |||||| | | || || ||| || || || | || ||| Sbjct 255509 CCCTTGAACCACGGATCCATTTCTAATGGTTCTTCGCCATCTAACATCCGTCTGACGTTA 255568 Query 325118 TCTACGATGTCTTTAGGGTTGTAACTGGGAATGTTCGTCGACCATCCGGTTCCGATACCA 325177 | |||||||| | ||| |||||| | |||| |||||| ||| ||||| ||||| ||| Sbjct 255569 GCCACGATGTCATGAGGATTGTAATTCAGAATCTTCGTCATCCAACCGGTACCGATTCCA 255628 Query 325178 CTCGATCCATTCACCAGGATACTCGGAATAACAGGCACATAATACTCTGGTTCGAT 325233 | || || |||| ||| | ||||| | || ||||||||||| |||||||| Sbjct 255629 TCAGTCCCGTTAACCAAGATCATGGGAATGATGGGAACATAATACTCAGGTTCGAT 255684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179219092412078