Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq626 93.3 9e-14 >seq626 Length=1369339 Score = 93.3 bits (102), Expect = 9e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 297186 ACCACGGTTTCATTTCGACGAGATCTTCTCCAGCAATCAATCGCTTCACGTTGTCTACGA 297245 ||||||| | |||||| | | ||||| ||| | | || || | ||||| | |||| Sbjct 255516 ACCACGGATCCATTTCTAATGGTTCTTCGCCATCTAACATCCGTCTGACGTTAGCCACGA 255575 Query 297246 TGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGAAC 297305 |||| | ||||||||| | | || || ||| ||||||||||||||||||| | | Sbjct 255576 TGTCATGAGGATTGTAATTCAGAATCTTCGTCATCCAACCGGTACCGATTCCATCAGTCC 255635 Query 297306 CATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGAT 297354 | || |||| || | ||||| | || ||||||||||| |||||||| Sbjct 255636 CGTTAACCAAGATCATGGGAATGATGGGAACATAATACTCAGGTTCGAT 255684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102473023149350