Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq626 89.7 6e-13 seq1005 84.2 3e-11 >seq626 Length=1369339 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 172808 AGAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTC 172867 || ||||| ||||| | | |||||||||||||||| | ||||| || || | | | Sbjct 256804 AGTGGGAAGACACCAAATTTATCACGACCAACCACACCCAAACCAGAGACGGCCAAAGAC 256863 Query 172868 TTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCC 172927 || || ||||| || ||||||| ||||||||||| | || | | ||| || || Sbjct 256864 TTGGCTGAATCTCCTTCCGTCAAAATGAGCGTACAGTCGATCGAGTATCTCGTGCCTGCA 256923 Query 172928 TTGTTCGCATCGTCCAACTTGGGAATACC 172956 ||||| ||||| |||| ||||||||||| Sbjct 256924 TTGTTGGCATCTTCCAGTTTGGGAATACC 256952 >seq1005 Length=1646370 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| ||||| || || | || || ||||| |||||||| ||||||| Sbjct 377508 GCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGTTCGTTCGAGAATGTCAGTCCT 377567 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| | ||| ||||| || | ||| || || ||| ||| ||||| ||||| || || Sbjct 377568 GGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCAAAGGAACCAGAGAAAAATATG 377627 Query 126167 CCCTCCACA 126175 || |||||| Sbjct 377628 CCTTCCACA 377636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597138545237080