Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1253 100 3e-16 seq1764 87.8 2e-12 seq16310 86.0 7e-12 seq4782 86.0 7e-12 seq3275 86.0 7e-12 seq56 84.2 2e-11 seq5014 82.4 8e-11 seq1005 82.4 8e-11 >seq1253 Length=553177 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | || | ||||| |||||| || |||||| ||||| ||||| |||| Sbjct 470205 ACCACCTCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAGA 470146 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || ||| | || || | |||||| || || || ||||| |||||||| || | ||| Sbjct 470145 CAACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGG 470086 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCA 42159 | | |||||||||| ||| | || | || ||| | | || || | ||| | Sbjct 470085 GATACCCTCCTTGTCC-TGAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCAA 470027 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| || |||||||| ||||| | || || || ||||||||||| Sbjct 470026 CTTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | |||| |||||||| | || ||||| || || |||||||| | | Sbjct 468183 CCTCCTCTGAGGCGCAGAACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGAC 468124 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || | || || |||||||| ||||| || || | || ||||| || | ||| Sbjct 468123 AAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGGA 468064 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||| || ||| | || | | | | | | | | ||||| | || || Sbjct 468063 ATACCTTCCTTATCT-TGAATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAAC 468005 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | |||||||||||||| || | ||||| |||||||| |||||||| Sbjct 468004 CTCAAGAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATCTGCATTTT 467954 Score = 86.0 bits (94), Expect = 7e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||| | |||||| |||||||||| ||| ||| || ||||||||||| || | Sbjct 469582 ACCTCCTCGCAGACGCAATACCAAATGCAGTGTAGACTCTTTCTGAATATTGTAGTCGGA 469523 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || | ||||| ||||| || || |||||||| ||||||| ||| Sbjct 469522 TAGCGTTCGTCCATCTTCCAATTGCTTTCCAGCAAAAATAAGTCGCTGTTGGTCGGGTGG 469463 >seq1764 Length=448002 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 || |||||||| | ||| || | | ||| |||||| ||||||||||||||||||||| Sbjct 177814 ATAAAAAATTTGCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGG 177873 Query 57054 ATACTCACCACTATACTACCGAGGA 57078 ||||| |||||||||||| |||||| Sbjct 177874 ATACTGACCACTATACTATCGAGGA 177898 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 254562 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 254503 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 254502 TACTATCGAGGAT 254490 >seq16310 Length=633 Score = 86.0 bits (94), Expect = 7e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | |||||||||||||||||| || ||| || ||||| ||||| || | Sbjct 21 ACCTCCACGCAGACGCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTGTAGTCGGA 80 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || ||| | || || | ||||| ||||| || || || ||||||||||||| ||| Sbjct 81 CAACGTACGCCCATCTTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCGGGTGG 140 >seq4782 Length=950 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/98 (81%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 56992 TTTATGAAAAA---TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGG 57048 ||| |||||| ||| |||| || | | ||| |||||| |||||||||||||||||| Sbjct 729 TTTCTGAAAATACTTTTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGG 670 Query 57049 CGGACATACTCACCACTATACTACCGAGGATTG-AATA 57085 ||| ||||| |||||||||||| |||||| || |||| Sbjct 669 CGGGGATACTGACCACTATACTATCGAGGACTGTAATA 632 >seq3275 Length=417686 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 56997 GAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||| | ||||| || | | ||| |||||| ||||||||||||||||||||| ||| Sbjct 348851 GAAAATTAGTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 348910 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||| |||||| Sbjct 348911 CTGACCACTATACTATCGAGGA 348932 >seq56 Length=80015 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 64464 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 64523 Query 57067 TACTACCGAGGA-TTGAATATATAA 57090 ||||| |||||| |||| | ||||| Sbjct 64524 TACTATCGAGGACTTGAGT-TATAA 64547 >seq5014 Length=477 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| ||||| | ||| |||||| |||||||||||||||||||| | ||||| |||||| Sbjct 462 CTCCCCGGCAGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGTAGATACT-GCCACTA 404 Query 57067 TACTACCGAGGA 57078 || ||||||||| Sbjct 403 TATTACCGAGGA 392 >seq1005 Length=1646370 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||| |||| | ||| || | | ||| |||||| ||||||||||||||||||||| ||| Sbjct 1624862 AAACATTTGCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1624921 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||| |||||| Sbjct 1624922 CTGACCACTATACTATCGAGGA 1624943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543017236601840