Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1253 125 7e-24 seq2866 123 2e-23 >seq1253 Length=553177 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | || |||| |||| ||||| |||||||||||||| ||||| | Sbjct 468786 CCGCCGCGGAGACGTAGAACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGAC 468727 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||| | |||||| |||||| | ||||| |||||||| || || ||| Sbjct 468726 AAAGTACGACCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGGA 468667 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| |||||| ||| ||| || | ||||| | || || Sbjct 468666 ATGCCTTCCTTGTCTTGAATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCAACC 468607 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | || || ||||| |||||||| ||||| || ||||| Sbjct 468606 TCAAGGGTAATAGTTTTCCCGGTTAAAGTTTTCACGAAGATCTGCAT 468560 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||||| || ||||||||||||||||| || |||| | || || | || ||| Sbjct 470414 ACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGAAAGCGTACGACCATCCTCA 470355 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 |||||||||||||| | || || || ||||||||||||||||| ||||| || ||||| Sbjct 470354 AGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGGAATACCTTCCTTATCTTGG 470295 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 ||||| ||| ||| || | ||| || | || ||||| | || | || || Sbjct 470294 ATTTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAACTTCGAGCGTGATAGTTTTC 470235 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| || || || || || ||||| Sbjct 470234 CCAGTCAACGTCTTGACAAAGATCTGCAT 470206 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || |||||| ||||| | || || || || ||||||||||| || | Sbjct 470205 ACCACCTCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAGA 470146 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || ||| | ||||| | |||||| |||||| | ||||| |||||||| || || || Sbjct 470145 CAACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGG 470086 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||||| || | ||||| | || || Sbjct 470085 GATACCCTCCTTGTCCTGAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCAAC 470026 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||| | ||| || || ||||| ||||| ||||| |||||||| Sbjct 470025 TTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || ||||||||||| | | || || | || |||||||||||||| Sbjct 468153 GTTGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGGCCATCCTCAAGCTGCTTGCCA 468094 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || ||||| || || ||||| ||||| || ||||| || || ||| Sbjct 468093 GCAAAGATCAAACGTTGCTGATCAGGTGGAATACCTTCCTTATCTTGAATCTTGGCCTTA 468034 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || ||| | || || || | ||| | ||| ||||| ||||| || Sbjct 468033 ACATTCTCAATAGTGTCAGAAGGCTCAACCTCAAGAGTGATGGTTTTGCCAGTCAATGTC 467974 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || || || |||||||| Sbjct 467973 TTGACAAAGATCTGCATTTT 467954 >seq2866 Length=178446 Score = 123 bits (136), Expect = 2e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||| |||||||||||||| | | ||||| ||||||| ||||| || || ||| ||| Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | | || ||||||||||||||||| ||||| || ||||| ||||| ||| ||| | Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTT 176777 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | |||||| | || || || | || | |||||| || || || || || |||| Sbjct 176778 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGA 176837 Query 64434 AAATTTGCATTTT 64446 |||| |||||||| Sbjct 176838 AAATCTGCATTTT 176850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499464921626440