Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1253 107 2e-18 >seq1253 Length=553177 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| ||||||||||| | | | || || ||||||||||| ||||| Sbjct 470432 CCTCCACGAAGACGTAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGAA 470373 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| || || || |||| |||| ||||| || ||||| ||||| Sbjct 470372 AGCGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGGA 470313 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| || || |||||| || | | ||| | ||||| | | || || Sbjct 470312 ATACCTTCCTTATCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAACT 470253 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | ||||| ||||||| || || ||||| |||||||| Sbjct 470252 TCGAGCGTGATAGTTTTCCCAGTCAACGTCTTGACAAAGATCTGCAT 470206 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | |||||| || | | ||||| ||||||||||| || ||| | Sbjct 468786 CCGCCGCGGAGACGTAGAACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGAC 468727 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | || || |||| | |||| |||||||| || || || || Sbjct 468726 AAAGTACGACCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGGA 468667 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| |||||| || | | ||| | ||| || | | ||| || Sbjct 468666 ATGCCTTCCTTGTC-TTGAATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCAAC 468608 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| || || | |||||| || || |||||||| Sbjct 468607 CTCAAGGGTAATAGTTTTCCCGGTTAAAGTTTTCACGAAGATCTGCAT 468560 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| || |||||| || || | || || |||| | Sbjct 470171 GACTCCTTCTGAATGTTGTAGTCAGACAACGTACGCCCATCTTCCAACTGCTTTCCGGCA 470112 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| |||||||| || || || || ||||| || ||||| ||| | || | ||||| Sbjct 470111 AAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTC-CTGAATCTTAGCTTTTAC 470053 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | ||| || | | || || |||| || | ||||| || |||| ||||| Sbjct 470052 GTTTTCTATGGTATCCGATGGTTCAACTTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTT 469993 Query 138600 TACAAAAATCTGCAT 138614 || || || ||||| Sbjct 469992 CACGAAGATTTGCAT 469978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496083739332720