Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1253 98.7 7e-16 seq2866 87.8 1e-12 >seq1253 Length=553177 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 ||||||||||||||||||||| |||||||| ||||| || || || | | | || Sbjct 470418 TAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGAAAGCGTACGACCATC 470359 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 || | || ||||| ||| | |||| ||| || |||||| ||||| |||||||| || Sbjct 470358 CTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGGAATACCTTCCTTATC 470299 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||||| || ||| |||| || || || | ||| || || | || || || Sbjct 470298 TTGGATTTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAACTTCGAGCGTGATAGT 470239 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| || |||| || || ||||| || |||||| Sbjct 470238 TTTCCCAGTCAACGTCTTGACAAAGATCTGCATA 470205 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 || |||||| ||||| || || |||||||| ||||| |||||| | | | | | || Sbjct 468772 TAGAACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGACAAAGTACGACCATC 468713 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 ||| || || || || || | || | |||||| || || ||||| ||||||||||| Sbjct 468712 TTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTC 468653 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGG 15142 |||||| || ||| |||| || ||||| | || || || || | |||||| | Sbjct 468652 TTGAATTTTTGCCTTGACATTTTCGATGGTATC-CGATGGCTCAACCTCAAGGGTAATAG 468594 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| || || | |||||| || || || |||||| Sbjct 468593 TTTTCCCGGTTAAAGTTTTCACGAAGATCTGCATA 468559 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||| | || | || | ||| | ||||| || || || |||||||| || | Sbjct 470204 CCACCTCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCA--G 470147 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | | | | ||||| || || || || || | || | |||||| || || || Sbjct 470146 ACAACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTG 470087 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATT-TTCT 15126 | || || |||||||| ||| || |||||| ||||||| ||||| | || ||| Sbjct 470086 GGATACCCTCCTTGTCCTGAATCTTAGCTTTTACGTTTTCTATGGTATC-CGATGGTTCA 470028 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || | ||||||||||| || |||| ||||| || || ||||||||| Sbjct 470027 ACTTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCATA 469977 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| || || || || || || |||||||||||| | | | | | || || Sbjct 468166 AACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGGCCATCCTC 468107 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || |||||||| | |||||||| || || || |||||| |||||||| || Sbjct 468106 AAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGGAATACCTTCCTTATCTTG 468047 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| || ||| | || ||||| || | || || || | || |||||||| Sbjct 468046 AATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAACCTCAAGAGTGATGGTTTT 467987 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || |||| || || ||||| || ||||| || Sbjct 467986 GCCAGTCAATGTCTTGACAAAGATCTGCATTTT 467954 >seq2866 Length=178446 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 14987 CTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15046 |||| || ||||||||||| | | | | ||||||| | ||||| ||||| | | Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 15047 TCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTT 15106 ||||||| || |||||| ||||| ||||||||||| ||||| || ||| ||| Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTT 176777 Query 15107 CTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15166 | || ||||| | || || || | ||| ||||| ||||| || | || || || | Sbjct 176778 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGA 176837 Query 15167 AAATTTGCATATT 15179 |||| ||||| || Sbjct 176838 AAATCTGCATTTT 176850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357266551052285