Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1253 122 8e-23 seq2866 95.1 1e-14 seq16310 87.8 2e-12 seq15804 82.4 7e-11 >seq1253 Length=553177 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | || | || || || | || |||||||||||||| || |||||| Sbjct 468787 TCCGCCGCGGAGACGTAGAACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGA 468728 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || ||| ||| || | ||| ||||| || |||| | ||||||||||| || || Sbjct 468727 CAAAGTACGACCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGG 468668 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||||| | ||| ||| || ||||| | ||||| ||| |||| ||| | Sbjct 468667 AATGCCTTCCTTGT-CTTGAATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCAA 468609 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | ||| | ||||| ||||| | |||||| || || |||||||| Sbjct 468608 CCTCAAGGGTAATAGTTTTCCCGGTTAAAGTTTTCACGAAGATCTGCAT 468560 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | || || || ||||| | ||||| ||||||||||| || || || Sbjct 470433 TCCTCCACGAAGACGTAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGA 470374 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||| ||| ||| || ||||| || || ||| |||||| || ||||| |||||||| Sbjct 470373 AAGCGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGG 470314 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| || |||||| ||| | | ||||| ||||| | | || || Sbjct 470313 AATACCTTCCTTATCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAAC 470254 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | ||||| || |||| || || ||||| |||||||| Sbjct 470253 TTCGAGCGTGATAGTTTTCCCAGTCAACGTCTTGACAAAGATCTGCAT 470206 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | ||||| ||| | |||||||| || ||||| ||||| || | Sbjct 470204 CCACCTCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 470145 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || | ||| ||||| || |||| | ||||||||||| || || Sbjct 470144 AACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGG 470085 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| | | || || | | ||| | ||| |||| || || Sbjct 470084 ATACCCTCCTTGTCC-TGAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCAAC 470026 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | ||||| || |||| ||||| || || || ||||| Sbjct 470025 TTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 >seq2866 Length=178446 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||| ||||| |||||||| | ||||| || || |||||||| ||||| | | Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 |||| || ||||| |||||||| || || |||||||| ||||||| ||| | | || Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTT 176777 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| ||| || | | ||| || || | ||| | || || || || | || || || | Sbjct 176778 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGA 176837 Query 127104 AAATCTGCAT 127113 |||||||||| Sbjct 176838 AAATCTGCAT 176847 >seq16310 Length=633 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||||||||||||| | |||||||||||| ||||| ||||| ||| || ||| || | Sbjct 34 CGCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTGTAGTCGGACAACGTACGCCCA 93 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCC 127011 || || | || |||||||| | |||| |||||||| ||||| || || || Sbjct 94 TCTTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCGGGTGGGATCCC 146 >seq15804 Length=1078 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||||||||||| || || || ||||| |||||||||||| Sbjct 498 GCACCACCACGAAGGCGGAGCACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAATCG 557 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || ||| ||| || | |||||| || || |||| |||| ||||||||| || Sbjct 558 GACAAAGTACGACCATCCTCCAACTGTTTGCCGGCAAAGATTAATCTCTGCTGATCAGGT 617 Query 127004 GGTATGCC 127011 || || || Sbjct 618 GGGATACC 625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475329613768240