Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1253 118 1e-21 seq2244 82.4 7e-11 >seq1253 Length=553177 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| |||||||| | | |||| || || || || || ||||| || ||||||||| Sbjct 468789 ATTCCGCCGCGGAGACGTAGAACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCG 468730 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| || ||||| || | || | || ||||| || || Sbjct 468729 GACAAAGTACGACCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGG 468670 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || |||||||||||| |||| ||| | ||| || || | ||| Sbjct 468669 GGAATGCCTTCCTTGTCTTGAATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCA 468610 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||||| ||||||| |||||| || || || ||||| Sbjct 468609 ACCTCAAGGGTAATAGTTTTCCCGGTTAAAGTTTTCACGAAGATCTGCAT 468560 Score = 102 bits (112), Expect = 7e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || || | || |||| ||| || || ||||| ||||| || ||||| || Sbjct 470435 ATTCCTCCACGAAGACGTAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTC- 470377 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | || ||| || | || || || ||| | |||| ||||||||||| | Sbjct 470376 -TGAAAGCGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGG 470318 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| ||||| |||||||| ||||| || | ||| | ||||| |||| | Sbjct 470317 GAGGAATACCTTCCTTATCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTT 470258 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||||| || | ||||| || || | || || ||||| || ||||| Sbjct 470257 CAACTTCGAGCGTGATAGTTTTCCCAGTCAACGTCTTGACAAAGATCTGCAT 470206 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | || || | ||| || ||||||||||| ||||| || |||||| Sbjct 468186 ATTCCTCCTCTGAGGCGCAGAACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCG 468127 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | || || || || | ||||| |||||||| || || Sbjct 468126 GACAAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGT 468067 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| ||||||||||| || || | || | ||||| |||| ||| Sbjct 468066 GGAATACCTTCCTTATCTTGAATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCA 468007 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | |||||||| || | || || ||||| || ||||| Sbjct 468006 ACCTCAAGAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATCTGCAT 467957 >seq2244 Length=477090 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 123885 TTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTT 123944 ||||| ||||| || | ||| | ||| | || ||||||| ||||| || || ||| Sbjct 403671 TTGTCGAATTTTCGCCATCGTCCGATAGGAATTGGAGTTCAAGGCTTGGCTGATGCTTTT 403612 Query 123945 GTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCC 124004 | | ||||| |||| || ||||| ||||| | |||| |||| |||||| | Sbjct 403611 ATCCTAATGCGCTATCCGTTTGATAGCGAAGAAGCGCAACTGCTAAATAAGCAAATTTTC 403552 Query 124005 GAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAA--AATTCACGGCG 124062 ||||| |||||||||||||| || || | || || || || | |||| |||| Sbjct 403551 GAAACGATTTATTACGGCGCATTAGAATCTTCGTGTGAGCTCGCTCAGCAATT--CGGCC 403494 Query 124063 CGTACGAAAGTTA 124075 ||||||||||||| Sbjct 403493 CGTACGAAAGTTA 403481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451840473197960