Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1005 111 3e-19 >seq1005 Length=1646370 Score = 111 bits (122), Expect = 3e-19 Identities = 245/364 (67%), Gaps = 9/364 (2%) Strand=Plus/Plus Query 159893 TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCC 159952 || || ||||||| || |||| | ||| ||||| ||||||||||| || || || Sbjct 377480 TTACCTAAAATGT-----TTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCT 377534 Query 159953 CGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAA 160012 | ||| || | ||||| || | | || || ||||| | || ||| ||| |||||| Sbjct 377535 CTAGAAATCAGTTCGTTCGAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAA 377594 Query 160013 AAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGC 160072 || || || ||||| | ||| ||||| || || ||||| || ||||| || || | Sbjct 377595 AATATTGCAGCAAAGGAACCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATT 377654 Query 160073 CTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTT 160132 || |||| ||| || | ||| | |||| || ||||||| ||||||||||| Sbjct 377655 CTTTCACTGTAAGGTGCATCTCTGTTACCAATCCATCTCATGGCCCAGTCAGCCTTCTTC 377714 Query 160133 GCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCT-GTCCTGCTCCTTCA-CATCCT 160190 || | || ||||| ||| || ||||| || | | | |||| | | || ||||| Sbjct 377715 GCAACACAAGGCATTGTCTCAACAGCGTTGAAAAGTTTCATCCT--TTCAGCAGAATCCT 377772 Query 160191 TGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCT 160250 |||| || |||| | | |||||| |||| ||| | |||||| ||||| || | Sbjct 377773 TGATGTAGGTTTCAATTAACAGGCTGTACATCTCTGAGTGGATATTTTCCATGGCTATTT 377832 Query 160251 GAAA 160254 | || Sbjct 377833 GGAA 377836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794868934188560