Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1253 134 3e-26 seq2866 89.7 1e-12 >seq1253 Length=553177 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| || || || || | ||| |||||||| || | ||||||||||| ||| || Sbjct 470199 TCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAGACAACGT 470140 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| |||||||||||| ||||||||||||||||| || || || || Sbjct 470139 ACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGGATACC 470080 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||||||||| || ||| ||| | ||| || | || ||| || || | Sbjct 470079 CTCCTTGTCCTGAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCAACTTCGAG 470020 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||| | |||||||| || ||||| Sbjct 470019 AGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTG 469981 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||||||||| ||||| | ||| || || | |||||| | |||||| Sbjct 468771 AGAACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGACAAAGTACGACCATCT 468712 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||||||||| ||||||||||||||||| || || ||| ||||| || Sbjct 468711 TCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCT 468652 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| ||| ||| || ||||| ||| || | || || || || | || || || Sbjct 468651 TGAATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCAACCTCAAGGGTAATAGTT 468592 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||||||||| || || || Sbjct 468591 TTCCCGGTTAAAGTTTTCACGAAGATCTG 468563 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || || ||||| | ||| ||||| | | || | ||||| || |||||| Sbjct 470408 TGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGAAAGCGTACGACCATCCTCAAGCTGC 470349 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||||||||| ||||| |||||||| ||| ||| ||||| || || || || Sbjct 470348 TTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGGAATACCTTCCTTATCTTGGATTTTA 470289 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||||| ||||||| | ||| || || | |||||| || || || || Sbjct 470288 GCCTTAACATTTTCGATTGTGTCTGAAGGTTCAACTTCGAGCGTGATAGTTTTCCCAGTC 470229 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | || || ||||| || || Sbjct 470228 AACGTCTTGACAAAGATCTG 470209 Score = 93.3 bits (102), Expect = 1e-13 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||| ||||||||||||||||||||||| | |||||| ||||||| ||| | || Sbjct 468686 CTCATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGTACTTTGTCCGATTATAACATTCAA 468745 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 |||||||| ||||||||| | ||| Sbjct 468746 AAAGAGTCGACTCTTCACTTAGTT 468769 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||| ||||| || |||||||||||||||||| | || ||| |||| |||||| ||||| Sbjct 468458 CTTATTTTCGCTGGTAAGCAGTTGGAAGATGGACGTACGTTGTCCGACTACAACATCCAG 468517 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||| || || |||||| | ||| | | ||||| Sbjct 468518 AAAGAATCAACCCTTCACTTGGTTCTTCGTCTTCG 468552 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || ||||||||||||||||||| |||||| || | || || | ||||| Sbjct 469168 AGAACCAGATGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGATAAGGTACGACCATCC 469109 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||| || || || || ||||| | ||| ||||| || ||| ||||||| Sbjct 469108 TCCAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCAGGAGGAATTCCT 469058 >seq2866 Length=178446 Score = 89.7 bits (98), Expect = 1e-12 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| || | |||||| |||| ||||| | ||| ||||||||||| || || || || Sbjct 176657 CCTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAA 176716 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || | ||| |||||||| ||| ||| ||||| || || || || ||| || | Sbjct 176717 ATCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTT 176776 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 |||| ||| || | | || || || | ||||| ||||||||||| | || || || Sbjct 176777 TCGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACG 176836 Query 199619 AAAATTTGGTACATTTT 199635 ||||| || |||||| Sbjct 176837 AAAATCTG---CATTTT 176850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178486562824667