Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1253 113 3e-20 >seq1253 Length=553177 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | ||| || || || || | ||| |||||||| || |||||||||| | Sbjct 468786 CCGCCGCGGAGACGTAGAACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGAC 468727 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| ||||| || || ||| |||| || | |||||||||||| | ||| Sbjct 468726 AAAGTACGACCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGGA 468667 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| |||||| || | | | | || || | || || Sbjct 468666 ATGCCTTCCTTGTCTTGAATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCAACC 468607 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| ||||| || ||||||||||| |||||||||||||| Sbjct 468606 TCAAGGGTAATAGTTTTCCCGGTTAAAGTTTTCACGAAGATCTGCAT 468560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347247669036833