Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1005 114 1e-20 seq2866 95.1 1e-14 seq1253 95.1 1e-14 >seq1005 Length=1646370 Score = 114 bits (126), Expect = 1e-20 Identities = 258/381 (68%), Gaps = 20/381 (5%) Strand=Plus/Plus Query 132877 AAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGT 132936 ||||| |||||||| | ||| ||||| ||||| |||| || || || || ||||| ||| Sbjct 377487 AAATGTTTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGT 377546 Query 132937 TCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCG 132996 ||||| ||| |||| || ||||| | || || ||||| ||||||||||| || || Sbjct 377547 TCGTTCGAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCA 377606 Query 132997 AAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAAC 133056 || || || || || | ||| || || || || ||||| || | | || | | | Sbjct 377607 AAGGAACCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGTAA 377666 Query 133057 GTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTG--ACGCACG 133114 | || ||| || | | ||||| | || ||||| || ||| ||||| | || || | Sbjct 377667 GGTGCATCTCTGTTACCAATCCATCTCATGGCCCAGTCAGCC--TTCTTCGCAACACAAG 377724 Query 133115 GCATCGTTTCGATGGCGTTCAACAAACGGAGTTTC-TC--TTCCGAGGAACGC---ACGT 133168 |||| || || | ||||| || |||||| || ||| | ||| | | || Sbjct 377725 GCATTGTCTCAACAGCGTTGAA------AAGTTTCATCCTTTCAGCAGAATCCTTGATGT 377778 Query 133169 AGGTGTCGATGA--GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||| || || | || | ||||| || ||||| | || |||||||| ||||| || Sbjct 377779 AGGTTTCAATTAACAGGCTG--TACATCTCTGAGTGGATATTTTCCATGGCTATTTGGAA 377836 Query 133227 GCCGTAAAAGCACCGCGCCTC 133247 || || || || || ||||| Sbjct 377837 ACCATAGAAACAGCGAGCCTC 377857 >seq2866 Length=178446 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 || |||||||| || ||||| || || | ||||| || ||||||||| | || || ||| Sbjct 176853 AACAAAATGCAGATTTTCGTTAAGACATTAACGGGTAAGACCATCACCCTTGAGGTTGAG 176794 Query 38298 GCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 | | || | | | ||| |||| | ||||||| ||||| || || ||||| || Sbjct 176793 CCTTCTGATACCATCGAAAATGTTAAGGCGAAAATCCAAGACAAGGAAGGTATTCCTCCC 176734 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 ||||| || || | |||| || || ||||||||||| |||| ||||| | || Sbjct 176733 GACCAGCAACGTTTGATTTTTGCTGGTAAACAGCTGGAAGACGGACGCACTTTATCTGAT 176674 Query 38418 TACAACATCCA-AAAGG 38433 |||||||| || ||||| Sbjct 176673 TACAACATTCAGAAAGG 176657 >seq1253 Length=553177 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | ||||| |||||||| || |||| || || | | Sbjct 469978 ATGCAAATCTTCGTGAAAACCTTGACGGGGAAAACCATTACTCTCGAAGTTGAACCATCG 470037 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | ||||| | |||| || || | ||||| ||||| || || | || || Sbjct 470038 GATACCATAGAAAACG-TAAAAGCTAAGATTCAGGACAAGGAGGGTATCCCACCAGATCA 470096 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || || || ||| |||| || | ||| || | |||||||| Sbjct 470097 GCAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGGCGTACGTTGTCTGACTACAA 470156 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || ||||| | || ||||| ||||||| || Sbjct 470157 CATTCAGAAGGAGTCTACTTTGCATCTGGTGCTTCG 470192 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || | || |||||||||||||| | || || ||| | Sbjct 467954 AAAATGCAGATCTTTGTCAAGACATTGACTGGCAAAACCATCACTCTTGAGGTTGAGCCT 468013 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | |||| | || || | || || || || ||||| | || Sbjct 468014 TCTGACACTATTGAGAATGTTAAGGCCAAGATTCAAGATAAGGAAGGTATTCCACCTGAT 468073 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || | || | || ||||| ||||| || || | || || | ||| ||| Sbjct 468074 CAGCAACGTTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTTTGTCCGATTAC 468133 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| |||||| | || || |||||||| ||||| | ||||| || Sbjct 468134 AACATCCAGAAGGAATCAACTCTCCATTTGGTTCTGCGCCTCAGAGGAGG 468183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499992731539840