Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1774 187 1e-41 seq2121 172 2e-37 seq359 161 4e-34 seq1253 138 4e-27 seq2866 134 5e-26 seq7251 122 3e-22 seq1581 91.5 6e-13 seq24 91.5 6e-13 >seq1774 Length=9228 Score = 187 bits (206), Expect = 1e-41 Identities = 364/533 (68%), Gaps = 6/533 (1%) Strand=Plus/Plus Query 450920 GGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAGAA 450979 || |||||| | || || |||| || ||||| ||||||| ||| ||||||| |||||| Sbjct 361 GGCATTGATTTGGGTACAACCTACTCCTGTGTTGGTGTTTTCCAGCATGGAAAGGTAGAA 420 Query 450980 ATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATTCA 451039 || || || |||||||| || ||||| || ||||| | || ||||| || | Sbjct 421 ATCATTGCTAATGACCAGGGTAATCGAACCACACCTTCTTACGTGGCATTTACCGACACC 480 Query 451040 GAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAAACACAG 451097 ||| | ||| | || | ||||| || | ||| ||| ||| | | || |||| Sbjct 481 GAACGTCTTATCGGTGATGCTGCCAAGAACCAAGTCGCAATG--AATCCTACCAATACAG 538 Query 451098 TATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGAGA 451157 ||| ||| ||||| || || || || || | | || ||| | ||| || || | Sbjct 539 TATTTGACGCTAAGCGATTGATCGGACGCAGATTCGAAGATTCTGTTGTCCAGGCTGACA 598 Query 451158 AAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATT 451217 ||| | | | ||| ||||| | | | ||| || || | || || || ||| Sbjct 599 TGAAACATTGGCCATTTGAAGTAGTTAGTGATGGAGGGAAACCAAAGATCCAGGTTGATT 658 Query 451218 ATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACT-AAA 451276 | || |||||| ||||| || || ||||| ||||| || ||||| || || ||| Sbjct 659 ACAAGAATGAAACCAAAACATTCTTCCCAGAAGAGATTTCCTCCATGGTG-TTGCTCAAA 717 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||||||||| || ||| || |||| | ||| | |||| || | || || Sbjct 718 ATGAAAGAAACTGCCGAAGCTTACCTTGGCAAAACTGTTGGTAATGCTGTTGTAACCGTC 777 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 || || ||||| |||||| | || || ||||| ||||||||||| ||| ||||||||| Sbjct 778 CCTGCCTATTTTAATGATTCCCAGCGACAAGCCACTAAAGATGCTGGAACAATTGCTGGT 837 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||||||||||||| || |||||||| ||||| || ||||| | || ||||| Sbjct 838 CTAAATGTTCTTCGTATCATTAATGAGCCTACTGCTGCTGCCATTGCTTATGG 890 >seq2121 Length=850518 Score = 172 bits (190), Expect = 2e-37 Identities = 193/258 (75%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 451192 AGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGA 451251 |||||| || | ||||||||| |||| ||||| ||||| ||||| ||| |||| ||||| Sbjct 531720 AGGAAAACCGAAAATTCAAGTAGATTACAAAGGGGAAACGAAAACGTTTTCTCCCGAAGA 531661 Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCC 451311 || || |||||||| ||| || ||||| || || || ||| || | || Sbjct 531660 GATCTCTTCTATGGTGCTTGTCAAGATGAAGGAGACGGCTGAAGCTTACCTAGGGCAAAA 531601 Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 ||| |||||||| || ||||||||||| || |||||||| ||| | ||||| |||||||| Sbjct 531600 AGTCACTGATGCCGTGATTACTGTTCCTGCATATTTCAACGATTCCCAACGTCAAGCAAC 531541 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 || ||||||||| || | || || || || ||||| |||||||| || || ||||| Sbjct 531540 AAAGGATGCAGGAACCATCTCGGGATTGAACGTCCTTCGTATTATTAACGAGCCGACAGC 531481 Query 451432 AGCTGCTCTAGCATATGG 451449 ||||| | || ||||| Sbjct 531480 TGCTGCCATTGCTTATGG 531463 >seq359 Length=249766 Score = 161 bits (178), Expect = 4e-34 Identities = 364/544 (67%), Gaps = 5/544 (1%) Strand=Plus/Plus Query 450918 TTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAG 450977 |||| |||||| | || || || | || ||||| || || | ||| | || || || | Sbjct 4453 TTGGCATTGATTTGGGTACAACTTACTCGTGTGTTGGGGTATTCCAGCACGGCAAGGTGG 4512 Query 450978 AAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATT 451037 | ||||| |||||||| |||||| || || || || |||| ||| ||| | || Sbjct 4513 AGATTATTGCAAATGATCAAGGAAACCGCACCACACCATCATATGTAGCGTTTTCAGACA 4572 Query 451038 CAGAAAGACTTTTAGGGCAAGCTGCTAAAT--CAATGGTAAATTCAAATGCCAAAAACAC 451095 | || | || | || | ||||| ||| ||| ||| | ||| | || ||||| Sbjct 4573 CTGAGCGTCTGATTGGTGATGCTGCAAAAAACCAA--GTAGCTATGAATCCTAACAACAC 4630 Query 451096 AGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGA 451155 ||| | |||||| ||||| | || ||||| | ||| || | || ||| || Sbjct 4631 AGTCTTTGATGCAAAACGCCTTATCGGCCGCCGATTTGAGGACACTGTCGTCCAAGCGGA 4690 Query 451156 GAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAA 451215 | ||| | | | ||| || | | | | ||||| || | |||||||| | Sbjct 4691 CATGAAACATTGGCCATTTGAAGTTATTAGTGATGGTGGAAAACCGAAGATTCAAGTTGA 4750 Query 451216 TTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAA 451275 |||||| ||| || ||||| || || || ||||| || || ||||| || || Sbjct 4751 ATATAAAAATGAGACAAAAACATTCTTCCCAGAGGAAATATCTTCCATGGTACTGCTGAA 4810 Query 451276 AATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGT 451335 ||||| ||||| || ||| ||| | || | || | |||| || ||||||| Sbjct 4811 GATGAAGGAAACTGCTGAAGCTTATTTGGGAAAGGCTGTGGCCAATGCTGTTGTTACTGT 4870 Query 451336 TCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGG 451395 || |||||||| || ||| | || || ||||| || |||||||| ||| |||||||| Sbjct 4871 ACCTGCTTATTTTAACGATTCCCAGCGTCAAGCTACCAAAGATGCTGGAACCATTGCTGG 4930 Query 451396 TTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGG 451455 | | |||||| | ||||| |||||||||||||| ||||||||| | || ||||| || || Sbjct 4931 TCTTAATGTTTTACGAATCATTAATGAACCTACTGCAGCTGCTATTGCCTATGG-CTTGG 4989 Query 451456 AAAA 451459 | || Sbjct 4990 ACAA 4993 >seq1253 Length=553177 Score = 138 bits (152), Expect = 4e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || ||| ||||||| ||||| || |||||||| ||||| | || Sbjct 467956 AATGCAGATCTTTGTCAAGACATTGACTGGCAAAACCATCACTCTTGAGGTTGAGCCTTC 468015 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | ||||| | |||| || ||||||||||||||||| ||||| |||||||| Sbjct 468016 TGACACTATTGAGAATGTTAAGGCCAAGATTCAAGATAAGGAAGGTATTCCACCTGATCA 468075 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 |||||||| || || | || || || ||||| ||||| | |||||| | ||||| || Sbjct 468076 GCAACGTTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTTTGTCCGATTACAA 468135 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACA 391282 || | ||||| |||| || || || || | | || |||||| ||| || Sbjct 468136 CATCCAGAAGGAATCAACTCTCCATTTGGTTCTGCGCCTCAGAGGAGGAATGCA 468189 Score = 138 bits (152), Expect = 4e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| | || || ||||||||||| ||||| ||||| |||| Sbjct 468560 ATGCAGATCTTCGTGAAAACTTTAACCGGGAAAACTATTACCCTTGAGGTTGAGCCATCG 468619 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | | || |||||||||||| |||||||| ||||| || ||||| Sbjct 468620 GATACCATCGAAAATGTCAAGGCAAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 468679 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || | |||||||| | |||||| | |||||||| Sbjct 468680 CAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGTACTTTGTCCGATTATAAC 468739 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | || || | || ||||||||||| Sbjct 468740 ATTCAAAAAGAGTCGACTCTTCACTTAGT 468768 Score = 114 bits (126), Expect = 5e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||| |||||||| || || || |||||| | || Sbjct 470206 ATGCAGATCTTTGTCAAGACGTTGACTGGGAAAACTATCACGCTCGAAGTTGAACCTTCA 470265 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | |||| ||||| |||||||||||||| |||||||| || || Sbjct 470266 GACACAATCGAAAATGTTAAGGCTAAAATCCAAGATAAGGAAGGTATTCCTCCCGACCAG 470325 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || ||| | || || || ||||| ||||| | || | | || ||||| Sbjct 470326 CAACGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGTACGCTTTCAGACTATAAC 470385 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTA 391262 ||| | || || | || ||||| ||||| ||| Sbjct 470386 ATTCAAAAAGAATCTACCCTTCATTTAGTTTTA 470418 >seq2866 Length=178446 Score = 134 bits (148), Expect = 5e-26 Identities = 140/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| ||| | || ||||| || || || ||||| ||||| | || Sbjct 176848 AATGCAGATTTTCGTTAAGACATTAACGGGTAAGACCATCACCCTTGAGGTTGAGCCTTC 176789 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||| ||| | |||| ||||| ||||| |||||||| |||||||| || || Sbjct 176788 TGATACCATCGAAAATGTTAAGGCGAAAATCCAAGACAAGGAAGGTATTCCTCCCGACCA 176729 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 |||||||| ||||| | || ||||| || ||||| ||| | ||||| | ||||| || Sbjct 176728 GCAACGTTTGATTTTTGCTGGTAAACAGCTGGAAGACGGACGCACTTTATCTGATTACAA 176669 Query 391229 TATT 391232 ||| Sbjct 176668 CATT 176665 >seq7251 Length=387 Score = 122 bits (134), Expect = 3e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 451251 AAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTC 451310 |||||||| || || || | |||||||| |||| || ||| | ||| | ||| | Sbjct 191 AAATTTCAGCTGAAGTGCTGAAAAAAATGAAGAAAACGGCGGAAGATTATCTGGGTGAGC 250 Query 451311 CAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAA 451370 |||| || || || || || |||||||| ||||| ||||| ||||| || || || || | Sbjct 251 CAGTGACAGAAGCGGTTATCACTGTTCCGGCTTACTTCAACGATGCGCAGCGTCAGGCGA 310 Query 451371 CTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAG 451430 |||||||||| || | ||| ||||||||| | || || || || || ||||| |||| Sbjct 311 CTAAAGATGCCGGCCGTATCGCTGGTTTAGAAGTAAAACGGATCATCAACGAACCAACAG 370 Query 451431 CAGCTGCTCTAGCATAT 451447 | ||||| || || ||| Sbjct 371 CGGCTGCCCTTGCTTAT 387 >seq1581 Length=2575128 Score = 91.5 bits (100), Expect = 6e-13 Identities = 164/235 (70%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCC--TGAAGAAATTTCATCTAT 451263 || |||| || |||||||| |||| || || || || | ||| ||||| | || | Sbjct 1337813 TTGAAGTTAACTATAAAGGCGAAAGAAAGACATT--CTACGTTGAGGAAATGACCTCAGT 1337756 Query 451264 GGTTCTTACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATG 451322 | ||||| ||||| |||||| ||| || ||| || | || | || || || | Sbjct 1337755 GATTCTT-CTAAAGATGAAACAAATTGCTGAAGCTTACTTGGGGACAGAGGTGACGGACG 1337697 Query 451323 CAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAG 451382 |||| || || ||||| ||| |||| || || | || || || ||||| ||||||| Sbjct 1337696 CAGTCATCACAGTTCCTGCTAATTTTAACGACTCGCAGCGCCACGCAACGCGTGATGCAG 1337637 Query 451383 GACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 || |||||||||||| |||||| | || || | ||||| || ||||||| || Sbjct 1337636 GAACTATTGCTGGTTTCAATGTTTTGCGTATCTTGAATGAGCCCTCAGCAGCAGC 1337582 >seq24 Length=3543970 Score = 91.5 bits (100), Expect = 6e-13 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 451188 AAAAAGGAAAGCCCTATATTCAAGT---AAATTATAAAGGTGAAACTAAAACTTTTGCTC 451244 |||| | ||||||||| || || || || || | |||| ||| ||| ||||| | Sbjct 1106270 AAAATGCAAAGCCCTACATCCAGGTGGAAACTTCTCAAGG---AACCAAAGTGTTTGCCC 1106326 Query 451245 CTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTG 451304 |||||||||| ||| |||||||| | || |||||||| |||||| || ||| Sbjct 1106327 CTGAAGAAATCTCAGCTATGGTTTTGGGAAAGATGAAAGAGGTTGCAGAAGCTTACCTTG 1106386 Query 451305 GTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGC 451364 | || || |||| || | ||||| || ||||| ||||||||||| || || | Sbjct 1106387 GCAAGAAGGTCACCCATGCTGTTGTAACTGTCCCAGCTTACTTCAATGATGCTCAGCGTC 1106446 Query 451365 AAGCAACTAAAGATGCAGGA 451384 |||| || |||||||| ||| Sbjct 1106447 AAGCCACCAAAGATGCCGGA 1106466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974989334596508