Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq8128 86.0 1e-12 >seq8128 Length=492 Score = 86.0 bits (94), Expect = 1e-12 Identities = 211/309 (68%), Gaps = 17/309 (6%) Strand=Plus/Minus Query 2386 GCGATGTGGTCCATCACGTGCCCGGTGCGCAGCAGTAGGCAGAA-CTCG---CCGTCGAC 2441 ||||||||||||||||| || | ||| |||| | | ||| | |||| || ||| | Sbjct 384 GCGATGTGGTCCATCACATGGCTGGTTCGCACC----GCCAGCATCTCGATGCCCTCGGC 329 Query 2442 CATGTCG---AACGTGTACGGGTGCTTGTAGTTGCCGCCGTCGATTTCCGACAGCACGGT 2498 | | | ||| | | |||| | || |||||| |||| || ||||| || Sbjct 328 GGTCTGGCAGAACAGGAAGGGGTAGCGGAAGCTGCCGCGTGCGATCTCGCTCAGCAGCGT 269 Query 2499 TTCCATGATCCAGACCCACGGTTCCCGATCGGCGCTCGTT-TCGGCGATGTGGCCGTTCA 2557 | || |||||| ||||| || | || ||| | |||| | ||| | ||||||| ||||| Sbjct 268 CTTCACGATCCACACCCATGGGTGGCGTTCGCC-CTCGGTGTCGCCAATGTGGCTGTTCA 210 Query 2558 TTTCAGCGAG-CAGATCGCGCGGGAAGTCGCCTTCCGTCGGATCCATGCCGGCGAACTCG 2616 | | ||| | ||| |||| | | |||||||| | || | ||| ||||||||||| ||| Sbjct 209 TCTG-GCGCGTCAGGTCGCCCAGAAAGTCGCCCTGCGACACATCGATGCCGGCGAAATCG 151 Query 2617 CACAGGTAGCGCCACGCGAGCGCG-ACGGCCGCATAGTTGCCGGCCATGCGTTTCGCGCC 2675 |||| | |||| | || ||||| ||||| | || || | ||| || |||||| Sbjct 150 CACA-GCAGCGTCCAGCCCGCGCGCACGGCGCCGTAATTTGTGATCATCCGGGCCGCGCC 92 Query 2676 GTCGTCCTC 2684 | |||| || Sbjct 91 GGCGTCATC 83 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118992889095276