Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq8128 116 1e-21 >seq8128 Length=492 Score = 116 bits (128), Expect = 1e-21 Identities = 222/316 (70%), Gaps = 16/316 (5%) Strand=Plus/Minus Query 2338 GGGCGATGTGGTCCATCACGTGGCCGGTGCGCAGCAGTAGGCAAAACTCG---CCGTCGA 2394 ||||||||||||||||||| |||| ||| |||| | || | |||| || ||| Sbjct 386 GGGCGATGTGGTCCATCACATGGCTGGTTCGCACCGCCAGC---ATCTCGATGCCCTCGG 330 Query 2395 CGGTATCGAAGGT---GAATGGGTGCTTGTAGTTGCCGCCGTCGATCTCCGACAGCACCG 2451 |||| | | || ||| |||| | || |||||| ||||||| ||||| || Sbjct 329 CGGTCTGGCAGAACAGGAAGGGGTAGCGGAAGCTGCCGCGTGCGATCTCGCTCAGCAGCG 270 Query 2452 TTTCCATGATCCAGACCCAAGGCTCGCGATCGGCGCTCG-TCTCGGCGACGTGGCCGTTC 2510 | | || |||||| ||||| || | ||| ||| | |||| | ||| | | ||||| |||| Sbjct 269 TCTTCACGATCCACACCCATGGGTGGCGTTCGCC-CTCGGTGTCGCCAATGTGGCTGTTC 211 Query 2511 ATCTCGGCGAG-CAGATCGCGCGGGAAGTCGCCTTCGCTCGGGTCCATGCCGGCGAACTC 2569 |||| |||| | ||| |||| | | |||||||| | | || ||||||||||| || Sbjct 210 ATCT-GGCGCGTCAGGTCGCCCAGAAAGTCGCCCTGCGACACATCGATGCCGGCGAAATC 152 Query 2570 GCACAGGTAGCGCCAGGCCAGCGCG-ACGGCCGCGTAGTTGCCGGCCATGCGCTTCGCGC 2628 ||||| | |||| | ||| ||||| ||||| |||| || | ||| || ||||| Sbjct 151 GCACA-GCAGCGTCCAGCCCGCGCGCACGGCGCCGTAATTTGTGATCATCCGGGCCGCGC 93 Query 2629 CGTCGTCCTC-GCCGC 2643 || |||| || ||||| Sbjct 92 CGGCGTCATCGGCCGC 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129610056655554