Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1253 176 1e-38 >seq1253 Length=553177 Score = 176 bits (194), Expect = 1e-38 Identities = 165/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| |||||||||||||| || ||||||| | ||| | |||||||| Sbjct 468769 AACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGACAAAGTACGACCATCTTC 468710 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||| || || ||||| || || || || ||||| ||||||||||| |||||||| Sbjct 468709 CAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTG 468650 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||||| |||||| || || ||||| ||||| || || |||||||||| || || Sbjct 468649 AATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCAACCTCAAGGGTAATAGTTTT 468590 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||||||| ||||| | ||||| Sbjct 468589 CCCGGTTAAAGTTTTCACGAAGATCTGCAT 468560 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 ||||| | ||||| || || ||||||||||| || || || | ||| || | ||||| Sbjct 470417 AAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGAAAGCGTACGACCATCC 470358 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || |||||||| || |||||||| || ||||| ||||| |||||||| ||||| || ||| Sbjct 470357 TCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGGAATACCTTCCTTATCT 470298 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || ||||| ||| || || || || ||||| ||| ||| ||||| || || | || Sbjct 470297 TGGATTTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAACTTCGAGCGTGATAGTT 470238 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || || || || | ||||| Sbjct 470237 TTCCCAGTCAACGTCTTGACAAAGATCTGCAT 470206 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| ||||||||||| ||||| || ||||| | | || | ||||| || Sbjct 469959 AACCAAGTGAAGGGTGGACTCTTTCTGAATGTTATAATCCGACAACGTACGTCCATCCTC 469900 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 |||||||| || ||||||||||| ||||| || || || ||||| ||| Sbjct 469899 TAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCGGGCGGAATACCT 469851 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || |||||||| ||||||||||| |||| || |||| |||||||| | ||| Sbjct 469557 TGCAGTGTAGACTCTTTCTGAATATTGTAGTCGGATAGCGTTCGTCCATCTTCCAATTGC 469498 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || || || || |||||||| |||||||| || || || ||| Sbjct 469497 TTTCCAGCAAAAATAAGTCGCTGTTGGTCGGGTGGGATACCT 469456 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 |||||||||||||| ||||| ||| || ||||| |||||||| ||| || |||||| Sbjct 469288 CCTTCTTTGTCTTGGATTTTGGCCTTAACATTCTCGATGGTGTCGGAAGGCTCAACTTCA 469229 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || |||||||| || ||||| | |||||| Sbjct 469228 AGAGTGATGGTTTTGCCAGTCAAAGTCTTAACGAAAATTTGCAT 469185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109072187074367