Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1253 107 1e-18 seq2866 87.8 1e-12 >seq1253 Length=553177 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || | | || |||| |||| ||| ||||||||||| Sbjct 470168 TCCTTCTGAATGTTGTAGTCAGACAACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAG 470109 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| |||||| ||| ||| | Sbjct 470108 ATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGAATCTTAGCTTTTACGTTT 470049 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | || | ||||| |||| || |||||||| ||||| | || ||||| Sbjct 470048 TCTATGGTATCCGATGGTTCAACTTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACG 469989 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 469988 AAGATTTGCATA 469977 Score = 98.7 bits (108), Expect = 6e-16 Identities = 153/215 (71%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| ||||||| || ||||| ||||||||||| || || | | || |||| || Sbjct 468769 AACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGACAAAGTACGACCATCTTC 468710 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||| ||||||||||| || || || ||||| ||| | || | || |||||||| Sbjct 468709 CAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTG 468650 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGG 34947 ||| || ||||| || | ||||| | ||| | |||||| || | ||| || | Sbjct 468649 AATTTTTGCCTTGAC--AT--TTTCGATGGTATCCGATGGCTCAACCTCAAGGGTAATAG 468594 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || || | ||| ||||| |||||||||||| Sbjct 468593 TTTTCCCGGTTAAAGTTTTCACGAAGATCTGCATA 468559 >seq2866 Length=178446 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||||||||| || || || | | ||| | || ||||||||||| || ||||| | Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | | ||||||||||| | || | || |||||||| || ||| || || | Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTT 176777 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | ||| | |||||| || | ||| ||||| || ||||| | ||||| || | Sbjct 176778 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGA 176837 Query 34972 AGATCTGCATATT 34984 | |||||||| || Sbjct 176838 AAATCTGCATTTT 176850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324519649649928