Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1005 212 7e-50 seq2244 100 3e-16 >seq1005 Length=1646370 Score = 212 bits (234), Expect = 7e-50 Identities = 278/385 (72%), Gaps = 0/385 (0%) Strand=Plus/Plus Query 18942 AAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAA 19001 || |||||| ||||| | ||||||||||| || || || || || |||||| |||| Sbjct 377486 AAAATGTTTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAG 377545 Query 19002 TTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGC 19061 ||| || || ||||| | || ||||||| |||| ||||| | ||| ||||| | ||| Sbjct 377546 TTCGTTCGAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGC 377605 Query 19062 AAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATA 19121 ||| || ||||| || ||||| ||||| || || |||||||| || | |||||| | || Sbjct 377606 AAAGGAACCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGTA 377665 Query 19122 ACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG 19181 | ||||| | ||| ||||||| ||| ||||| ||||||||||| ||||| || Sbjct 377666 AGGTGCATCTCTGTTACCAATCCATCTCATGGCCCAGTCAGCCTTCTTCGCAACACAAGG 377725 Query 19182 CATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATC 19241 ||||||||| | || || || || | ||| | ||| | | ||| || | || | || Sbjct 377726 CATTGTCTCAACAGCGTTGAAAAGTTTCATCCTTTCAGCAGAATCCTTGATGTAGGTTTC 377785 Query 19242 TATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAA 19301 || || | |||||||| ||||| || |||||||| || || || || || || || || Sbjct 377786 AATTAACAGGCTGTACATCTCTGAGTGGATATTTTCCATGGCTATTTGGAAACCATAGAA 377845 Query 19302 ACATCTTGCTTCTGTTATCTGTACT 19326 ||| | || || | || || |||| Sbjct 377846 ACAGCGAGCCTCAGGTACCTTTACT 377870 >seq2244 Length=477090 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| ||||||| ||||| ||| ||||| |||| | ||||||| ||| || || | Sbjct 402737 TCCAGGCATAGAAGTGCATTGAAGTCAATTTTCCATAATTCGGTTCTGCAATGTGTATGT 402796 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | || ||||| ||||| || || ||||| | |||||| ||||| | | ||| || | Sbjct 402797 TCAATGACTGACTTTGATCGATGAAAGCACCACGATCAGCAGCCATCTTAATAATGACGC 402856 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATA 47197 ||||| || ||||||||||||||||| Sbjct 402857 GCTGTGGAATTTCCCATACTGTTTTATA 402884 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48353 TTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGAC 48412 ||| ||||| || || || | || | ||||| || || || || | || ||||||||| Sbjct 404570 TTTGTTACCACCCTGGTCCACGTAACGTGCAGTGTTATTGTATACGCGTAGCATTGGGAC 404629 Query 48413 AATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACT 48472 | ||| || ||||| ||||| ||||| | ||||||||||| | || | ||| | Sbjct 404630 TAGACCGTTCGATATTCCATTTGTTCCGGCGATATAACTTCCGGTGGCCCGTATGCAATG 404689 Query 48473 AATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532 || | || |||||||| || ||| ||||||| ||||| | || | || || Sbjct 404690 TATGTTGAGGCCAATACCACCAGCTGATTTGGATATTATGGCACATTGCTTTAATGTTTC 404749 Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 |||||| || || || || |||||| ||||| | | || ||||| || Sbjct 404750 ATAAATACCATCAATGCTGTCATCTTTCATAGTAAGAAGGAAACAGCT 404797 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 47327 TTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGA 47386 |||||||||||| || || |||| |||| ||| || || ||||| | |||||| || Sbjct 403181 TTGAAATTCTCCTGAGAGGACTCGACGGACATAGATGTTGGAAGTATACGCTTCTATCGA 403240 Query 47387 TTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCT 47446 ||| || || || |||||||| || || || ||||||||||| | ||| | ||| | Sbjct 403241 TTCGTTGTTACCTAAAATTTGTGCCGTCGAAGCTGTAGGCATTGGTGCTAATAAAAGTGA 403300 Query 47447 ATTTCTTACTCCATATT 47463 ||||| ||||||| ||| Sbjct 403301 ATTTCGTACTCCAAATT 403317 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 48151 CTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAG 48210 |||| || ||||||||||| |||||||| | ||||| || | || || || | Sbjct 404277 CTAAACCCGGACATTCATTCGGACACATAAGAGACCACTCTCCGTCTGATTCAACGCGCT 404336 Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCT--TC 48268 ||| || | ||| || ||||||||||| ||| || || | || | ||||| || Sbjct 404337 GCATGAAAAGATCAGGAATCCAAAGAGCGTAAAACAAGTCAC--GTGCACGGTTCTCTTC 404394 Query 48269 ATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAA 48328 || || ||||| |||| || |||||||| || | || ||| | |||||||||||||| Sbjct 404395 TTTTCCGGTATTCTTTTTTAGATCAAGAAATTCAAATACATCCGAATGCCATGGTTCTAG 404454 Query 48329 ATATATTGC 48337 || ||||| Sbjct 404455 GTAAATTGC 404463 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 48608 ATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTC 48667 ||| || |||||||| || |||||| | ||||||||||| || ||||| || |||||||| Sbjct 404888 ATTGAACAATGTTGGGGAGGCATGAGTGAACCATTTCTCAGACAACAAGTTGTATGTTTC 404947 Query 48668 AATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTG 48727 ||| ||| || | ||| | |||||| || | ||| || | ||| | ||| | ||| Sbjct 404948 AATGGCAGCTTCCAAATCATCTCCATGTATGCCAACAGACACTCTCATCATCATGTGTTG 405007 Query 48728 AGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 || | || ||| ||| | |||||||| | || ||| | |||| Sbjct 405008 TGGACGCTCTACAGGTTTTCCAGAAATTTTCAACAAGTAAGATCTCTCCA 405057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561906433805640