Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1774 273 2e-67 seq359 232 5e-55 seq2121 163 2e-34 seq1253 93.3 3e-13 seq24 93.3 3e-13 seq2866 87.8 1e-11 >seq1774 Length=9228 Score = 273 bits (302), Expect = 2e-67 Identities = 392/549 (71%), Gaps = 4/549 (1%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | || || ||||| || || || || ||||||||||||| || |||| || Sbjct 354 AGCTGTGGGCATTGATTTGGGTACAACCTACTCCTGTGTTGGTGTTTTCCAGCATGGAAA 413 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| ||||| ||||| || ||||| |||| || || ||||| || | || || Sbjct 414 GGTAGAAATCATTGCTAATGACCAGGGTAATCGAACCACACCTTCTTACGTGGCATTTAC 473 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || || |||| | | | |||||||| || || | |||| | | ||||||||||| Sbjct 474 CGACACCGAACGTCTTATCGGTGATGCTGCCAAGAACCAAGTCGCAATGAATCCTACCAA 533 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 ||| | ||||| ||||| || || || ||| | || || | ||||| ||| ||||| Sbjct 534 TACAGTATTTGACGCTAAGCGATTGATCGGACGCAGATTCGAAGATTCTGTTGTCCAGGC 593 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC 550290 || ||||| |||||||| || || | |||| || | || ||||| | || | | Sbjct 594 TGACATGAAACATTGGCCATTTGAAGTAGTTAGTGATGGAGGGAAACCAAAGATCCAGGT 653 Query 550291 TACT--CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTA 550348 | | || ||| || ||||| | ||| |||||| | ||||| || ||||| || Sbjct 654 TGATTACAAGAATGAAACCA-AAACATTCTTC-CCAGAAGAGATTTCCTCCATGGTGTTG 711 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATA 550408 | ||||||||| |||| ||| |||| |||| || ||| |||| || || Sbjct 712 CTCAAAATGAAAGAAACTGCCGAAGCTTACCTTGGCAAAACTGTTGGTAATGCTGTTGTA 771 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || ||||||||||| || || || ||||| ||||||||||||||| ||| Sbjct 772 ACCGTCCCTGCCTATTTTAATGATTCCCAGCGACAAGCCACTAAAGATGCTGGAACAATT 831 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| || |||||||||||||| || ||||| |||||||||||||| |||| ||||| Sbjct 832 GCTGGTCTAAATGTTCTTCGTATCATTAATGAGCCTACTGCTGCTGCCATTGCTTATGGG 891 Query 550529 CTTGATAAA 550537 | |||||| Sbjct 892 TTAGATAAA 900 >seq359 Length=249766 Score = 232 bits (256), Expect = 5e-55 Identities = 379/542 (70%), Gaps = 3/542 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | || || ||||| || || || || |||||||| || | || | || || Sbjct 4449 GCTGTTGGCATTGATTTGGGTACAACTTACTCGTGTGTTGGGGTATTCCAGCACGGCAAG 4508 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || |||||||| ||||||||||| ||| | || || ||||| ||||| | || | Sbjct 4509 GTGGAGATTATTGCAAATGATCAAGGAAACCGCACCACACCATCATATGTAGCGTTTTCA 4568 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || ||||| | | | |||||||||| |||||| | |||| || ||||||| ||| Sbjct 4569 GACACTGAGCGTCTGATTGGTGATGCTGCAAAAAACCAAGTAGCTATGAATCCTAACAAC 4628 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | |||||||| ||||| | || || | | ||| | || | || || || Sbjct 4629 ACAGTCTTTGATGCAAAACGCCTTATCGGCCGCCGATTTGAGGACACTGTCGTCCAAGCG 4688 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || ||||| |||||||| || || || ||| || | ||||||||| | ||| ||| | Sbjct 4689 GACATGAAACATTGGCCATTTGAAGTTATTAGTGATGGTGGAAAACCGAAGATTCAAGTT 4748 Query 550292 ACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 || || || | ||| | ||| | ||||| |||| || || ||||| | | Sbjct 4749 GAATATAAAA-ATGAGACAAAAACATTCTTCCCAGAGGAAATATCTTCCATGGTACTGCT 4807 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 ||| ||||| |||| || |||| | | || | | || | |||| || | || Sbjct 4808 GAAGATGAAGGAAACTGCTGAAGCTTATTTGGGAAAGGCTGTGGCCAATGCTGTTGTTAC 4867 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 |||||| || |||||||| || || || ||||||||||| |||||||||||| ||||| Sbjct 4868 TGTACCTGCTTATTTTAACGATTCCCAGCGTCAAGCTACCAAAGATGCTGGAACCATTGC 4927 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| ||||||||| | || || || |||||||||||||| ||||| |||| ||||| || Sbjct 4928 TGGTCTTAATGTTTTACGAATCATTAATGAACCTACTGCAGCTGCTATTGCCTATGG-CT 4986 Query 550531 TG 550532 || Sbjct 4987 TG 4988 >seq2121 Length=850518 Score = 163 bits (180), Expect = 2e-34 Identities = 343/508 (68%), Gaps = 4/508 (1%) Strand=Plus/Minus Query 552085 GAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAA 552144 ||||| | ||||| || || ||| || | |||||||| || | ||||| || || || Sbjct 530986 GAGATGCTAAGATGGACAAGTCCCAAATTCATGAAATCGTATTGGTTGGAGGTTCAACTC 530927 Query 552145 GAATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAATGA 552202 | ||||| ||||||| | ||||| ||| ||| || |||||| || || | || | Sbjct 530926 GTATTCCCAAAATTCAGAAGATGTTGCAAGA-CTTCTT-CAATGGAAAGGAACTGAACAA 530869 Query 552203 AAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 | | ||||| ||||| || || || || |||||||| | || || || |||||| Sbjct 530868 GTCTATCAATCCTGATGAAGCCGTCGCATACGGTGCCGCGGTCCAGGCTGCAATTCTTCA 530809 Query 552263 TGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCT 552322 ||| | | || | ||| || | | || | || ||| ||||||| || || Sbjct 530808 TGGGGATAAGTCGGAGGCGGTCCAAGATTTGTTGCTGCTTGACGTTGCTCCTCTGTCGCT 530749 Query 552323 TGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382 ||| | ||||||| ||| ||| |||||||| || ||| | | || || ||||| || Sbjct 530748 TGGAATTGAAACAGCTGGCGGTGTTATGACTTCCCTCATCAAGCGGAACACCACTATCCC 530689 Query 552383 TTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442 || || ||| || || | |||||| | ||||| ||| ||| || || || Sbjct 530688 AACGAAGCAAACTCAAGTTTTCACAACGTATGCTGATAACCAACCTGGCGTCCTCATCCA 530629 Query 552443 AATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTT 552502 | | || |||||| || | ||||| || || |||| | || | || | || Sbjct 530628 GGTGTACGAGGGAGAACGAGCCATGACTAAGGACAACAATCTGTTGGGAAAATTCGAGTT 530569 Query 552503 AGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGA 552562 || ||||||||||||||||| || ||||| || || |||||||| || || ||||| Sbjct 530568 GACTGGCATTCCTCCTGCTCCTCGAGGCGTACCCCAGATCGAAGTTACCTTTGACATCGA 530509 Query 552563 TGCCAATGGAATTTTGAATGTGACTGCT 552590 ||| || || |||||||| || |||||| Sbjct 530508 TGCGAACGGCATTTTGAACGTTACTGCT 530481 Score = 150 bits (166), Expect = 1e-30 Identities = 244/351 (70%), Gaps = 0/351 (0%) Strand=Plus/Minus Query 550177 TTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATAT 550236 ||| ||||| |||||||| ||||| | | ||| |||| | ||||| ||| ||||| Sbjct 531813 TTTAGATGCAAAACGTTTGATTGGCCGTCGATTTGATGACGCCACTGTCCAGAGTGATAT 531754 Query 550237 GAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTCA 550296 |||||||||||| ||| || || | | | | |||||||| | ||| ||| | | Sbjct 531753 GAAGCATTGGCCATTCAAAGTTATAAGCGATGGAGGAAAACCGAAAATTCAAGTAGATTA 531694 Query 550297 TGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAAT 550356 |||| ||| ||||| || ||| | || || |||||||| | | || || Sbjct 531693 CAAAGGGGAAACGAAAACGTTTTCTCCCGAAGAGATCTCTTCTATGGTGCTTGTCAAGAT 531634 Query 550357 GAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACC 550416 ||| | || || |||| | || ||| |||| || ||||| || || ||||| || Sbjct 531633 GAAGGAGACGGCTGAAGCTTACCTAGGGCAAAAAGTCACTGATGCCGTGATTACTGTTCC 531574 Query 550417 AGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACT 550476 |||||||| || || || ||||||||||| || || ||||| ||| || | ||| | Sbjct 531573 TGCATATTTCAACGATTCCCAACGTCAAGCAACAAAGGATGCAGGAACCATCTCGGGATT 531514 Query 550477 TAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || ||||||||||| || || || || |||||||| |||| ||||| Sbjct 531513 GAACGTCCTTCGTATTATTAACGAGCCGACAGCTGCTGCCATTGCTTATGG 531463 Score = 93.3 bits (102), Expect = 3e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 361705 ACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGC 361764 ||||||||| | | ||||||||| || |||||||| || || || || | ||||| Sbjct 531462 ACCATAAGCAATGGCAGCAGCTGTCGGCTCGTTAATAATACGAAGGACGTTCAATCCCGA 531521 Query 361765 TATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGT 361824 || || |||||| || ||||||||||| | ||| || ||||||||||||||||| Sbjct 531522 GATGGTTCCTGCATCCTTTGTTGCTTGACGTTGGGAATCGTTGAAATATGCAGGAACAGT 531581 Query 361825 AATCACTGC 361833 |||||| || Sbjct 531582 AATCACGGC 531590 >seq1253 Length=553177 Score = 93.3 bits (102), Expect = 3e-13 Identities = 155/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| || || | ||||| || ||| | |||| ||| || ||||| | | ||| Sbjct 468778 GAGACGTAGAACTAAGTGAAGAGTCGACTCTTTTTG--AATGTTATAATCGGACAAAGTA 468721 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||| | || ||||||||||| || || | |||||||| || ||||| ||| Sbjct 468720 CGACCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCT 468661 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGA 563433 || || |||||||||||| || || || || ||||| | | | || || Sbjct 468660 TCCTTGTCTTGAATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCAACCTCAAGG 468601 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| |||||| || || | |||||| ||||| || |||||| Sbjct 468600 GTAATAGTTTTCCCGGTTAAAGTTTTCACGAAGATCTGCATA 468559 >seq24 Length=3543970 Score = 93.3 bits (102), Expect = 3e-13 Identities = 130/182 (71%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 550023 GTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACA 550082 || |||| ||||| | ||||||| |||||||| || | ||||||||||| ||| Sbjct 1105965 GTAGTGTGGGTGTCTTCAAAAATGGCCGTGTTGAAATCATCCCGAATGATCAAGGAAACC 1106024 Query 550083 GAACTACTCCATCTTATGTTTCTTTCA---CGGAAACTGAACATTTAGTTGGTGATGCAG 550139 | | ||||||||| |||||| |||| | | || | ||||| | |||||||||| | Sbjct 1106025 GTATTACTCCATCCTATGTTGCTTTTACTGCTGATAATGAACGCCTTATTGGTGATGCTG 1106084 Query 550140 CAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTG 550199 | ||| | ||| ||| || ||| |||||| | |||||||| || ||| | |||| Sbjct 1106085 CCAAAAACCAACTTACTACCAACCCTGAAAATACTGTATTTGATGCCAAGCGTCTCATTG 1106144 Query 550200 GA 550201 || Sbjct 1106145 GA 1106146 >seq2866 Length=178446 Score = 87.8 bits (96), Expect = 1e-11 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||| |||||||||| || ||| | | ||||| || ||||| || |||||||| | | Sbjct 176665 AATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAATCAAACG 176724 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 |||||| || |||||||| ||||| || ||||| ||||| || || || || || Sbjct 176725 TTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTTCGATGGT 176784 Query 563412 ATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 ||||| | | || || || | || ||||| || | || ||||||||||| || Sbjct 176785 ATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGAAAATCTG 176844 Query 563472 CAT 563474 ||| Sbjct 176845 CAT 176847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027772873227490