Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1005 187 3e-42 >seq1005 Length=1646370 Score = 187 bits (206), Expect = 3e-42 Identities = 272/381 (71%), Gaps = 10/381 (3%) Strand=Plus/Plus Query 37158 AAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAAT 37217 |||| ||| |||| | ||||||||||| || || | ||||||||||||| |||| | Sbjct 377487 AAATGTTTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGT 377546 Query 37218 TCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCA 37277 || || || || || | ||||||||| ||||||| ||||||| |||||||||||| ||| Sbjct 377547 TCGTTCGAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCA 377606 Query 37278 AAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAA 37337 || || ||||| || || || ||||| || || ||||| ||||||| | | || | || Sbjct 377607 AAGGAACCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGTAA 377666 Query 37338 GTTG-AACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTC 37396 | || | || | | | ||||||| | | | ||| || ||||| |||||| Sbjct 377667 GGTGCATCTCT-GTTACCAATCCATCTCATGGCCCAGTCAGCCTTCTTCGCAACACAAGG 377725 Query 37397 AATTGTTTCAATTGCTTTTAAGAGAAAGttt----ttttCTTCACTATCTGTTATATAAG 37452 ||||| |||| || || | ||||||| |||| || ||| | || || | Sbjct 377726 CATTGTCTCAACAGCGTTGA----AAAGTTTCATCCTTTCAGCAGAATCCTTGATGTAGG 377781 Query 37453 TATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCAT 37512 | ||||||| | || ||||| || ||||| |||||||| || ||||| || ||||||| Sbjct 377782 TTTCAATTAACAGGCTGTACATCTCTGAGTGGATATTTTCCATGGCTATTTGGAAACCAT 377841 Query 37513 AAAAACACCTAGCTTCAGATA 37533 | ||||| | ||| |||| || Sbjct 377842 AGAAACAGCGAGCCTCAGGTA 377862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592103558548040