Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1253 167 2e-36 >seq1253 Length=553177 Score = 167 bits (184), Expect = 2e-36 Identities = 182/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||||| |||||| ||||| || || |||||||| || || ||||||| Sbjct 468788 TTCCGCCGCGGAGACGTAGAACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGG 468729 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| ||||| ||||| || ||||| || | |||||| ||||| || | Sbjct 468728 ACAAAGTACGACCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGG 468669 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||||||||| || |||||||||||| || ||| |||| | || || || | || | Sbjct 468668 GAATGCCTTCCTTGTCTTGAATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCAA 468609 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAA 101480 | ||||| || | ||||| |||||||||||||| || || |||||||| |||||| Sbjct 468608 CCTCAAGGGTAATAGTTTTCCCGGTTAAAGTTTTCACGAAGATCTGCATACCACCGCGAA 468549 Query 101481 GA 101482 || Sbjct 468548 GA 468547 Score = 165 bits (182), Expect = 6e-36 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | || | ||| ||||| || || ||||| || || || |||||||||| Sbjct 468185 TTCCTCCTCTGAGGCGCAGAACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGG 468126 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | | |||| || | ||||| || ||||| |||||||| || ||||| || | Sbjct 468125 ACAAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTG 468066 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| ||||||||||| || || ||| | || | ||||||||| | || | Sbjct 468065 GAATACCTTCCTTATCTTGAATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAA 468006 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | |||||||||| |||||||| || || || || ||||| |||||||| Sbjct 468005 CCTCAAGAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATCTGCAT 467957 Score = 156 bits (172), Expect = 3e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||||||||||||||||||||||||||||||||| || || || || | Sbjct 470434 TTCCTCCACGAAGACGTAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTG 470375 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | |||| || | ||||| || || || |||| ||| || || ||||| | Sbjct 470374 AAAGCGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAG 470315 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| |||||||| ||||| || ||| |||| | ||||| || | ||| | Sbjct 470314 GAATACCTTCCTTATCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAA 470255 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| || |||| ||||| || || || || || ||||| |||||||| Sbjct 470254 CTTCGAGCGTGATAGTTTTCCCAGTCAACGTCTTGACAAAGATCTGCAT 470206 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 101366 CCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCA 101425 ||||| ||||||||||| || || || |||| | ||||||||||| ||| |||||| Sbjct 468891 CCTTCCTTATCTTGAATCTTCGCCTTCACGTTTTCAATAGTGTCAGACGGTTCAACTTCA 468832 Query 101426 AGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || |||| ||||||||| || || ||||| ||||| || ||||| Sbjct 468831 AGCGTGATCGTTTTGCCTGTCAAGGTTTTGACAAAAATTTGCAT 468788 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | ||| || || ||||| || ||||| ||||| || |||||||| |||| Sbjct 469581 CCTCCTCGCAGACGCAATACCAAATGCAGTGTAGACTCTTTCTGAATATTGTAGTCGGAT 469522 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| |||| ||||||||||| || ||||| || | |||||||| ||||| || Sbjct 469521 AGCGTTCGTCCATCTTCCAATTGCTTTCCAGCAAAAATAAGTCGCTGTTGGTCGGGTGGG 469462 Query 101363 ATGCCT 101368 || ||| Sbjct 469461 ATACCT 469456 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || |||||||| |||||||| || || ||||| |||| | || | | Sbjct 468547 ACGAAGAACCAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCGGACAACGTACGTCC 468488 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCT 101368 ||| ||||| |||||||| || || || | ||| ||||||||||| || || ||| Sbjct 468487 ATCTTCCAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCGGGAGGGATACCT 468433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396139301451957