Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1253 122 7e-23 seq2866 82.4 6e-11 >seq1253 Length=553177 Score = 122 bits (134), Expect = 7e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||||||||| || ||||| || | | | ||| | || ||||||||||| |||||||| Sbjct 468751 CTCTTTTTGAATGTTATAATCGGACAAAGTACGACCATCTTCCAACTGCTTTCCGGCAAA 468692 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| ||||| | ||||| ||| |||||||| ||| ||| || ||| Sbjct 468691 GATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTGACATT 468632 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||| ||||| | ||||| ||||| || || |||||||| || Sbjct 468631 TTCGATGGTATCCGATGGCTCAACCTCAAGGGTAATAGTTTTCCCGGTTAAAGTTTTCAC 468572 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 468571 GAAGATCTGCAT 468560 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| | || ||| || ||||| ||||| ||||| | | || Sbjct 470195 AGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAGACAACGTACGC 470136 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| |||||||| || || ||||| ||||| | || | |||||| Sbjct 470135 CCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCC 470076 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| |||||| | | | || || | || || || | ||| Sbjct 470075 TTGTCCTGAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCAACTTCGAGAGTA 470016 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| |||||||| ||||| || || || ||||| Sbjct 470015 ATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/112 (79%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| || || |||||| ||||||||||| || ||||| |||| Sbjct 469572 AGACGCAATACCAAATGCAGTGTAGACTCTTTCTGAATATTGTAGTCGGATAGCGTTCGT 469513 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGGA 48659 | || ||||| ||||| || ||||| || ||||||||||| || |||||| Sbjct 469512 CCATCTTCCAATTGCTTTCCAGCAAAAATAAGTCGCTGTTGGTCGGGTGGGA 469461 >seq2866 Length=178446 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||| ||||| ||||||||||||| | | || |||| |||| ||| ||||| ||||| | Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 ||| || || || || | |||| || |||||||| || || || ||| Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTT 176777 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | | || || | ||| ||||| | || || || || ||||| || || || || | Sbjct 176778 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGA 176837 Query 48757 AAATCTGCAT 48766 |||||||||| Sbjct 176838 AAATCTGCAT 176847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380803886259723