Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1253 111 1e-19 >seq1253 Length=553177 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| ||||| || ||||| |||||| || || || || Sbjct 468560 ATGCAGATCTTCGTGAAAACTTTAACCGGGAAAACTATTACCCTTGAGGTTGAGCCATCG 468619 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| |||||| ||||| || || | ||| |||||| Sbjct 468620 GATACCATCGAAAATGTCAAGGCAAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 468679 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | || |||||||| || || || ||||||||| | ||| || ||||||||||| Sbjct 468680 CAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGTACTTTGTCCGATTATAAC 468739 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||||||||| || ||||| ||| Sbjct 468740 ATTCAAAAAGAGTCGACTCTTCAC 468763 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| || ||||| ||||||||||| |||| ||||| || Sbjct 469978 ATGCAAATCTTCGTGAAAACCTTGACGGGGAAAACCATTACTCTCGAAGTTGAACCATCG 470037 Query 28614 GAGACGGTGGCCGATCT-CAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | |||| || | || ||||| ||||| | || |||||| Sbjct 470038 GATACCATAGAAAACGTAAAAGCTAAGATTC-AGGACAAGGAGGGTATCCCACCAGATCA 470096 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | || |||||||| || || || ||||||||| || || | || || || Sbjct 470097 GCAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGGCGTACGTTGTCTGACTACAA 470156 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||| || || |||||| |||| |||| | || | ||||| || || Sbjct 470157 CATTCAGAAGGAGTCTACTTTGCATCTGGTGCTTCGACTCCGAGGTGGTAT 470207 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/118 (76%), Gaps = 4/118 (3%) Strand=Plus/Plus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCG 28725 || |||||| ||||||| ||||| || || |||||||||||| | || |||| ||| Sbjct 469469 GACCAACAGCGACTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGAACGCTAT--CCG 469526 Query 28726 ATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | || || ||||| ||||| ||||| ||||| ||||||| | | |||||||| || Sbjct 469527 ACTACAATATTCAGAAAGAGTCTACACTGCATTTGGTATTGCGTCTGCGAGGAGGTAT 469584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425255477730579