Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2244 96.9 2e-15 >seq2244 Length=477090 Score = 96.9 bits (106), Expect = 2e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 ||||| || ||| || | ||| |||||||| | || ||||| || || | || | Sbjct 404327 TCAACGCGCTGCATGAAAAGATCAGGAATCCAAAGAGCGTAAAACAAGTCACGTGCACGG 404386 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAA-TCAAAAATATCTGAGTGCCA 26040 | |||||||||||| ||||||||||||||| |||||| ||||| | ||| || ||||| Sbjct 404387 TTCTCTTCTTTTCCGGTATTCTTTTTTAGATC-AAGAAATTCAAATACATCCGAATGCCA 404445 Query 26041 TGGTTCTAAATAGATAGCAAAA 26062 |||||||| || || |||||| Sbjct 404446 TGGTTCTAGGTAAATTGCAAAA 404467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252951179876075