Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq512 93.3 6e-14 >seq512 Length=3718170 Score = 93.3 bits (102), Expect = 6e-14 Identities = 166/241 (69%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 47837 ACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTA 47896 ||||| | || |||||||| |||||||| |||||||| | | ||||||||||| | Sbjct 2863093 ACATA-CTTCAACATAATCCCTGGCATGACCCCAGTCTCTTTTGGAGTCAAGATTTCCCA 2863151 Query 47897 GATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAG 47956 | | ||| || || |||| | |||| | || | || ||||| | | Sbjct 2863152 GTTCAAAATGTTCCATCTGACCTAGTGCGATTTTGGCGACTGAACGAGTGATCTTCCTGG 2863211 Query 47957 TTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCAT 48016 |||| ||||||||||| || | ||| ||| ||||| ||||| || ||| | || ||| Sbjct 2863212 TTACGAAAGTTTCACCGCGACGAGGACTTTCGTGATTGAAAAGGATGCCATTGCAAGCAA 2863271 Query 48017 ACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACAC 48076 |||| || | ||| ||||| || |||| |||||||| |||| || || || |||| Sbjct 2863272 ACATGTTATAAGCTTCTCGATAATTGGTTACAATCCAGTAAGCATACAGCTTCGCCACAC 2863331 Query 48077 C 48077 | Sbjct 2863332 C 2863332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665254813697320