Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1253 136 7e-27 >seq1253 Length=553177 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||| | |||||| ||||||||||| |||| ||| || ||| || ||||| Sbjct 470207 ATACCACCTCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCA 470148 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || ||||| | ||| || || || ||||||||||| || | | ||| ||||| || Sbjct 470147 GACAACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGT 470088 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || || || | ||||| ||| || ||||| || | ||| Sbjct 470087 GGGATACCCTCCTTGTCCTGAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCA 470028 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || ||||| || || | ||||| || || |||||||| Sbjct 470027 ACTTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 Score = 113 bits (124), Expect = 8e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 193169 CTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAA 193228 |||||| ||| ||||| ||||| || || | | ||| || || || ||||||||||| Sbjct 468751 CTCTTTTTGAATGTTATAATCGGACAAAGTACGACCATCTTCCAACTGCTTTCCGGCAAA 468692 Query 193229 AATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATT 193288 || | | ||| ||||| || || || ||||| || ||||| ||||| | || | ||| Sbjct 468691 GATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTGACATT 468632 Query 193289 TAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTAC 193348 | || ||||| || | |||||| || || || |||||||| || |||| ||||| || Sbjct 468631 TTCGATGGTATCCGATGGCTCAACCTCAAGGGTAATAGTTTTCCCGGTTAAAGTTTTCAC 468572 Query 193349 AAATATTTGCAT 193360 || || ||||| Sbjct 468571 GAAGATCTGCAT 468560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899330513170320