Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1253 127 4e-24 seq2866 114 3e-20 seq15804 98.7 2e-15 seq1005 96.9 7e-15 >seq1253 Length=553177 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| || || | || | ||| ||||||| ||| || || || || ||| Sbjct 470207 ATACCACCTCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCA 470148 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| ||||| || || || |||||||| | | ||| ||||| ||| Sbjct 470147 GACAACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGT 470088 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || ||| |||||| || ||| | ||| || | ||| Sbjct 470087 GGGATACCCTCCTTGTCCTGAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCA 470028 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||||||||| || || || ||||| | || || ||||| Sbjct 470027 ACTTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 Score = 123 bits (136), Expect = 5e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| || || | || ||||| | ||| | || || ||| || ||||| Sbjct 468186 ATTCCTCCTCTGAGGCGCAGAACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCG 468127 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| || | || || ||||||||||| || | || ||||||||| Sbjct 468126 GACAAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGT 468067 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || || ||||| |||| || || | || Sbjct 468066 GGAATACCTTCCTTATCTTGAATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCA 468007 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || ||||| |||||||| ||||| ||||| || | ||| ||||||||||| Sbjct 468006 ACCTCAAGAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATCTGCATTTT 467954 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | ||| | ||| | ||| || ||| || ||||| Sbjct 469186 ATGCCACCGCGCAGACGAAGAACCAGATGAAGAGTCGACTCCTTTTGGATGTTGTAATCC 469127 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || || |||| |||| |||||||||||||||||| || | || |||||||| Sbjct 469126 GATAAGGTACGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCAGGA 469067 Query 192427 GGTATTCCT 192435 || |||||| Sbjct 469066 GGAATTCCT 469058 >seq2866 Length=178446 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||||||||| || ||| | || |||| |||||||||||||| || || | Sbjct 176666 ATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAATCAAACGT 176725 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || || || || ||||| || ||||| ||||| || ||||| || | | Sbjct 176726 TGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTTCGATGGTA 176785 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | || || || || || ||||| ||||| |||||||| |||| || |||||| Sbjct 176786 TCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGAAAATCTGC 176845 Query 192535 ATTTTATT 192542 ||||| || Sbjct 176846 ATTTTGTT 176853 >seq15804 Length=1078 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || | || |||||||| || | || || |||||| ||||| || Sbjct 500 ACCACCACGAAGGCGGAGCACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAATCGGA 559 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| ||||| ||||| || ||||||||||||||||| ||||||||||| Sbjct 560 CAAAGTACGACCATCCTCCAACTGTTTGCCGGCAAAGATTAATCTCTGCTGATCAGGTGG 619 Query 192429 TATTCCT 192435 || ||| Sbjct 620 GATACCT 626 >seq1005 Length=1646370 Score = 96.9 bits (106), Expect = 7e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883 ||||||||||| || | ||| || || ||||| || | ||| || || || | | Sbjct 377505 CATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGTTCGTTCGAGAATGTCAGT 377564 Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 49943 |||||||| || |||| |||||||||||||||||||| ||||| || ||| || ||| Sbjct 377565 CCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCAAAGGAACCAGAGAAAAAT 377624 Query 49944 ATACCCTCGACACACGCAAATGCTATTATTCTT 49976 || || || ||| ||||| |||| |||||| Sbjct 377625 ATGCCTTCCACAGCAGCAAAAGCTACAATTCTT 377657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984116714266350