Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2866 134 2e-26 seq1253 122 2e-22 seq1005 105 1e-17 >seq2866 Length=178446 Score = 134 bits (148), Expect = 2e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| ||||||| ||| |||| |||| ||||||||||||||||| || | Sbjct 176665 AATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAATCAAACG 176724 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 || ||||| || || || ||||| || ||||| ||||| || ||||| || || Sbjct 176725 TTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTTCGATGGT 176784 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | || || || || || ||||| ||||| |||||||| |||| ||| ||||| Sbjct 176785 ATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGAAAATCTG 176844 Query 172067 CATTTTATT 172075 |||||| || Sbjct 176845 CATTTTGTT 176853 >seq1253 Length=553177 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| ||||| | || | ||| ||||||| ||| || ||| || || || Sbjct 470207 ATACCACCTCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCA 470148 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || ||||| || || || ||||| || | | ||| || || ||| Sbjct 470147 GACAACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGT 470088 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || ||| |||||| || ||| ||||| || | ||| Sbjct 470087 GGGATACCCTCCTTGTCCTGAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCA 470028 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||||||||| || || || ||||| | ||| || ||||| Sbjct 470027 ACTTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 Score = 105 bits (116), Expect = 1e-17 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || | || ||||| | ||| | || || || || ||||| Sbjct 468186 ATTCCTCCTCTGAGGCGCAGAACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCG 468127 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || || | || || |||||||| || || | || || |||||| Sbjct 468126 GACAAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGT 468067 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || || ||||| ||||| || || | || Sbjct 468066 GGAATACCTTCCTTATCTTGAATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCA 468007 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAA 172079 || || ||||| |||||||| ||||| ||||| || | || ||||||||||| | ||| Sbjct 468006 ACCTCAAGAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATCTGCATTTTGCTCTAA 467947 Query 172080 A 172080 | Sbjct 467946 A 467946 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| |||| || || ||||| ||||| | |||| |||||| |||||| || || Sbjct 469584 ATACCTCCTCGCAGACGCAATACCAAATGCAGTGTAGACTCTTTCTGAATATTGTAGTCG 469525 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | |||| | || |||||||| || ||||||||||| | || ||||||||| ||| Sbjct 469524 GATAGCGTTCGTCCATCTTCCAATTGCTTTCCAGCAAAAATAAGTCGCTGTTGGTCGGGT 469465 Query 171960 GGTATTCCT 171968 || || ||| Sbjct 469464 GGGATACCT 469456 >seq1005 Length=1646370 Score = 105 bits (116), Expect = 1e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 ||||||||||| || | |||||| || ||||| || | ||| || || || | | Sbjct 377505 CATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGTTCGTTCGAGAATGTCAGT 377564 Query 39186 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 39245 |||||||| || |||| |||||||||||||||||||| ||||| || ||| || ||| Sbjct 377565 CCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCAAAGGAACCAGAGAAAAAT 377624 Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTT 39278 || || |||||| ||||| |||| |||||| Sbjct 377625 ATGCCTTCCACAGCAGCAAAAGCTACAATTCTT 377657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904810139725800