Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1005 102 2e-16 >seq1005 Length=1646370 Score = 102 bits (112), Expect = 2e-16 Identities = 232/342 (68%), Gaps = 8/342 (2%) Strand=Plus/Minus Query 133319 TTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTC--TAA 133376 || ||||| | || || || |||||||||||||| || | || | | | ||| Sbjct 377845 TTCTATGGTTTCCAAATAGCCATGGAAAATATCCACTCAG--AGATGTACAGCCTGTTAA 377788 Query 133377 TTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGA-A 133435 |||| || |||||||| ||| | | | | | ||||| |||||||| || | || | Sbjct 377787 TTGAAACCTACATCAAGGATTCTGCTGAAAGGATGAAACTTTTCAACGCTGTT-GAGACA 377729 Query 133436 TTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCG 133495 | |||||| || ||||| |||||||||| || | |||||| ||| ||| Sbjct 377728 ATGCCTTGTGTTGCGAAGAAGGCTGACTGGGCCATGAGATGGATTGGTAACAGAGATGCA 377669 Query 133496 AGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCG 133555 || | | | || |||||||||| || || ||||| |||||| |||| | Sbjct 377668 CCTTACAGTGAAAGAATTGTAGCTTTTGCTGCTGTGGAAGGCATATTTTTCTCTGGTTCC 377609 Query 133556 TTCTGCT-CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAA 133614 || |||| | || ||||||||||||||||| ||| | | || |||||| || || || Sbjct 377608 TT-TGCTGCAATATTTTGGCTTAAAAAGCGAGGTTTGATGCCAGGACTGACATTCTCGAA 377550 Query 133615 CGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 |||||| ||||| || || || | || ||| ||| ||||| Sbjct 377549 CGAACTGATTTCTAGAGATGAAGGTCTGCACTGCGATTTTGC 377508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471274480447937