Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2580 98.7 1e-14 seq17189 91.5 2e-12 seq17009 91.5 2e-12 seq1581 91.5 2e-12 >seq2580 Length=1487765 Score = 98.7 bits (108), Expect = 1e-14 Identities = 159/219 (73%), Gaps = 11/219 (5%) Strand=Plus/Minus Query 733092 GGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTG-GGCAGCG--TGCGCTCC 733148 ||||||||| | | ||||| ||||| || |||||||| ||| || | | | | || Sbjct 176028 GGCGACAAATTCGCCTCGCGTCACGGACAGAAGGGCAC-GTGCGGTATCCAATACCGTCA 175970 Query 733149 ACCGAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCG 733208 | ||||||||||| | || | ||| || || ||||||||| | ||||||||| Sbjct 175969 A--GAGGACATGCCTT--TCACTT-GCGAAGGATTAACTCCCGACATCATCATCAACCCG 175915 Query 733209 CACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGTG 733268 |||||||||||||| ||||||||||| ||| | || |||| ||| | |||||| || Sbjct 175914 CACGCCATCCCGTCCCGCATGACCATCGGCCATTTGATCGAATGCCTTCAGGGCAAAGT- 175856 Query 733269 GCCTGC-CGCGAGGGCTACATCGGCGACGGCACGCCCTT 733306 | |||| | ||||| | || ||||||| ||| || || Sbjct 175855 GTCTGCAAACAAGGGCGAAATAGGCGACGCCACTCCATT 175817 >seq17189 Length=262 Score = 91.5 bits (100), Expect = 2e-12 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 1726939 CAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCA 1726998 |||||| || | | |||| | | |||| |||| ||||||| || |||||||||||| Sbjct 29 CAGGCCTTCATCGATGCGGTAGCTCTCGTCCAGGTAGGGGTCGTTGATCAGGCCCTTCCA 88 Query 1726999 CCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCAAAGCGCGTCGCC 1727058 || || || ||||||||||| |||| ||| |||||||||| | |||| ||||| Sbjct 89 GCCCACCGTGGTGCGCGGCTTCTCGAAGTAGACGCGCATGACGATCTCCAGCGTGTCGCG 148 Query 1727059 GACCTCGTCTCGGACAAAGGCGCGCAGGCGTCGGCCATAGTCGACGACGGCCGCCGGGTC 1727118 || || || || | | || ||||||| || | || || | | || |||||||| Sbjct 149 TACTTC-TCGCGCTCGA--GC-AGCAGGCGGCGTGCGTACTCCAGCGCCGCAGCCGGGTC 204 Query 1727119 GTGCGCCGAACACGGACCAACGATAACCAGCAGCCG 1727154 ||| || || || || | ||| |||||||| || Sbjct 205 GTGGATGGAGCAGGGGCCCATGATGACCAGCAGGCG 240 >seq17009 Length=896 Score = 91.5 bits (100), Expect = 2e-12 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| ||| || ||| || ||||| || || |||||||| ||||| | ||| || Sbjct 697 GCCAATTCACCAGGCAGGAGAAGGCGGACAGCCGTCTGGATTTCGCGACTTGTGATAGTT 638 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||||| |||| || ||||| | || | ||||| || | |||||| Sbjct 637 GATCGCTTGTTGTAGTGAGCAAGACGAGAAGATTCACCAGCAATGCGTTCAAAAATGTCG 578 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| || |||||||| || ||| | ||| ||||||||| |||| || || ||| Sbjct 577 TTGACGAAGCTGTTCATGATCGTCATGGCTTTGGAGGAGATGCCAGCGTCAGGATGGACC 518 Query 1254528 TGCTTGAGCACCTTGTAGAT 1254547 ||||| | ||| |||||||| Sbjct 517 TGCTTCAACACTTTGTAGAT 498 >seq1581 Length=2575128 Score = 91.5 bits (100), Expect = 2e-12 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 || || || || ||||||||||| || | ||| || |||||||| |||| || Sbjct 893113 AGACGGACAGCCGTCTGGATCTCCCGGCTTGTGATGGTCGATCGCTTGTTGTAGTGAGCA 893172 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 ||||| || || ||||||| |||| ||||||||||| || |||||||| | Sbjct 893173 AGACGAGAGGATTCTCCAGCGATGCGCTCGAAAATGTCGTTGACGAAGCTGTTCATGATC 893232 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||| | ||| ||||||||| |||||| || |||||||| | || ||||||||| Sbjct 893233 GTCATGGCTTTGGAGGAGATGCCAGTGTCGGGATGGACCTGCTTCAATACTTTGTAGATG 893292 Score = 87.8 bits (96), Expect = 2e-11 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||| || || ||| | ||| || || || ||||| ||||| || | ||| | Sbjct 1525541 TGGCCAACTCACCAGGCAACAGCAGACGAACTGCCGTCTGAATCTCTCGACTCGTGATGG 1525600 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | |||||||| |||| || ||||| | || | | ||||| |||| |||| Sbjct 1525601 TAGAACGCTTGTTGTAGTGGGCGAGACGAGACGATTCTCCGGCAATGCGCTCGAAAATGT 1525660 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||||||||| |||||||| | ||| | ||| ||||||||| |||||| || | Sbjct 1525661 CGTTGACAAAGCTGTTCATGATGGTCATGGCTTTGGAGGAGATGCCAGTGTCGGGATGGA 1525720 Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| | || ||||||||| Sbjct 1525721 CCTGCTTCAATACTTTGTAGATG 1525743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104775655064917