Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2384 113 4e-20 seq1253 89.7 4e-13 >seq2384 Length=1457084 Score = 113 bits (124), Expect = 4e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 || ||||| ||||| || |||| ||||| |||||| |||||||| ||||| ||||| || Sbjct 811182 GGTCGTCCTAGCGCTTTAGCGACTTCGGTCATGTTAACGATGACGGTCTTTATGCCATTT 811123 Query 34555 CCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 || || ||||| ||||| || | | ||| ||||||||||| || || || || ||||| Sbjct 811122 CCTTTACCTTCAACCTTAGCCAACAAGCGAGGCATTTTGTAACGATAAAATGCATCCGCT 811063 Query 34615 ACATTGCGGTTAACGTT 34631 || || || || ||||| Sbjct 811062 ACGTTCCGATTTACGTT 811046 >seq1253 Length=553177 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || |||||||||||||| ||||| |||||| | || ||||| Sbjct 468560 ATGCAGATCTTCGTGAAAACTTTAACCGGGAAAACTATTACCCTTGAGGTTGAGCCATCG 468619 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || || ||| ||||| |||||| | ||| ||||| Sbjct 468620 GATACCATCGAAAATGTCAAGGCAAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 468679 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||| |||| |||| | || || | ||||| ||| Sbjct 468680 CAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGTACTTTGTCCGATTATAAC 468739 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||| || || | ||| | || || | || || || |||| Sbjct 468740 ATTCAAAAAGAGTCGACTCTTCACTTAGTTCTACGTCTCCGCGGCGGAA 468788 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| || || || ||||||||||| ||||| || || Sbjct 469978 ATGCAAATCTTCGTGAAAACCTTGACGGGGAAAACCATTACTCTCGAAGTTGAACCATCG 470037 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | |||||| |||||| ||||| || || | || ||||| Sbjct 470038 GATACCATAGAAAACGTAAAAGCTAAGATTCAGGACAAGGAGGGTATCCCACCAGATCAG 470097 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||| |||| |||| | || || | || |||||| Sbjct 470098 CAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGGCGTACGTTGTCTGACTACAAC 470157 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || ||||| ||||| ||||| | |||| ||||| || Sbjct 470158 ATTCAGAAGGAGTCTACTTTGCATCTGGTGCTTCGACTCCGAGGTGG 470204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412696687566893