Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_022066.1 Length=108297 Score E Sequences producing significant alignments: (Bits) Value seq7706 102 6e-17 seq8581 87.8 1e-12 >seq7706 Length=455 Score = 102 bits (112), Expect = 6e-17 Identities = 131/180 (73%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 95172 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 95231 ||||| ||||| ||||| |||| || ||||| ||||| ||||| || || |||| || Sbjct 132 GTTGGCCTTGATCAGGCCGGTGATCACGTCCACCGAGGGGCGCTGGGTGGCGAGGATCAG 191 Query 95232 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 95291 || || || || || ||||||||||| ||||| ||| | | || ||| | | || Sbjct 192 GTGGATGCCCGCCGCACGCGCCTTCTGCGCGATACGGGC---GATGAGCTCTTCCACCTT 248 Query 95292 CTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGGGAG 95351 |||| | || |||||| | ||| |||| ||||||||| | ||||||||| ||| || Sbjct 249 CTTGCCGACGATCATCATCATGTCGGCGAATTCGTCGACGATGACCACGATGGTGGGCAG 308 >seq8581 Length=356 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 95455 TCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATC 95514 || || ||||| ||| || || || ||||| || | ||| | | | ||||| |||| Sbjct 330 TCCGTCACCACGGGCGCCAGCAGATGCGGGATGCCTTCGTAGACGCTCATTTCCAGCATC 271 Query 95515 TTCGGGTCGATCATGATGAGCTTGACC-CGATCAGGATTGGCTCGGTAGAGCATGGAAAC 95573 || |||||||||| ||| || || || | | | ||| |||||||| ||| | Sbjct 270 TTGGGGTCGATCAGGATCAGGCGCACATCGCGC-GCCTCGGCCTTGTAGAGCAAGGACAG 212 Query 95574 CAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTG 95633 | ||| | ||||||| | ||||||||||| ||||||| || |||||||| ||| Sbjct 211 GATCATGGCGTTGATGCCGACCGACTTGCCCGAACCGGTGGTACCGGCCACCAGGCAGTG 152 Query 95634 GGGCATTTTGGCCAGGT 95650 ||||| |||||||||| Sbjct 151 CGGCATCTTGGCCAGGT 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346304000392338