Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1581 109 9e-18 seq211 102 1e-15 seq2580 95.1 2e-13 seq14755 93.3 7e-13 >seq1581 Length=2575128 Score = 109 bits (120), Expect = 9e-18 Identities = 171/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || || || || || ||||| |||||| || || ||| Sbjct 1525499 TGTACTTGGTCACAGCCTTCGTTCCTTCAGACACAGCGTGTTTGGCCAACTCACCAGGCA 1525558 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | ||| || || || ||||| ||||| || | ||| || |||||||| ||| Sbjct 1525559 ACAGCAGACGAACTGCCGTCTGAATCTCTCGACTCGTGATGGTAGAACGCTTGTTGTAGT 1525618 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| | | | | ||| | | ||||| |||| |||||||||||||| ||| Sbjct 1525619 GGGCGAGACGAGACGATTCTCCGG--CAATGCGCTCGAAAATGTCGTTGACAAAGCTGTT 1525676 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| | ||| | |||| ||||||||| |||||| || |||||||| | || || Sbjct 1525677 CATGATGGTCATGGCTTTGGAGGAGATGCCAGTGTCGGGATGGACCTGCTTCAATACTTT 1525736 Query 1485708 GTA 1485710 ||| Sbjct 1525737 GTA 1525739 Score = 107 bits (118), Expect = 3e-17 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 |||||||| || ||||| || || || || || || ||| |||||| || || | | Sbjct 893050 TACTTGGTTACTGCCTTTGTGCCTTCAGACACAGCATGCTTGGCCAACTCACCAGGAAGC 893109 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || || || || ||||||||||| ||| | ||| || |||||||| | | Sbjct 893110 AGAAGACGGACAGCCGTCTGGATCTCCCGGCTTGTGATGGTCGATCGCTTGTTGTAGTGA 893169 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || || || || || ||||||| |||| ||||||||||| || ||||||| Sbjct 893170 GCAAGACGAGAGGATTCTCCAGCGATGCGCTCGAAAATGTCGTTGACGAAGCTGTTCATG 893229 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 |||| ||| | |||| ||||||||| |||||| || |||||||| | || ||||| Sbjct 893230 ATCGTCATGGCTTTGGAGGAGATGCCAGTGTCGGGATGGACCTGCTTCAATACTTTGTA 893288 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || || || || || || || |||||| ||| || ||| Sbjct 1007245 TGTACTTGGTAACTGCCTTTGTGCCTTCAGACACAGCATGTTTGGCCAATTCACCAGGCA 1007186 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || || || || ||||| |||||| | ||| || | |||||| | Sbjct 1007185 GAAGCAGACGGACAGCCGTTTGGATTTCGCGGCTCGTGATGGTAGATCTCTTGTTGTAGT 1007126 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||||| || || | ||||| || | ||||||||||| || ||||| Sbjct 1007125 GAGCAAGGCGAGAGGATTCTCCAGCAATGCGTTCAAAAATGTCGTTGACGAAGCTGTTCA 1007066 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||| ||| | |||| |||||||| ||| ||||| |||||||| | ||| |||| Sbjct 1007065 TGATCGTCATGGCTTTGGAAGAGATGCCAGTGTCAGGGTGGACCTGCTTCAACACTTTGT 1007006 Query 1485710 A 1485710 | Sbjct 1007005 A 1007005 Score = 93.3 bits (102), Expect = 7e-13 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || || || || || || ||| |||||||||| || ||| Sbjct 526957 TGTACTTAGTAACAGCCTTTGTGCCTTCAGATACTGCATGCTTGGCCAGTTCACCAGGCA 527016 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || || ||||| || ||| || ||| || |||||||| | Sbjct 527017 GAAGGAGACGAACAGCTGTTTGGATTTCCCGGCTGGTGATAGTAGAACGCTTGTTGTAGT 527076 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || | || | || || |||| ||||| ||||| || ||||| Sbjct 527077 GGGCAAGACGAGAAGATTCTCCAGCTATACGTTCGAAAATGTCATTGACGAAACTGTTCA 527136 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||| ||| | ||| || ||||| ||||||||| |||||||| | ||| |||| Sbjct 527137 TGATCGTCATAGCTTTCGAAGAAATGCCAGTGTCGGGGTGGACCTGCTTTAACACTTTGT 527196 Query 1485710 A 1485710 | Sbjct 527197 A 527197 Score = 93.3 bits (102), Expect = 7e-13 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||| || ||||| || || ||||||||||| | || | ||| ||| ||| Sbjct 1947790 TACTTGGTGACAGCTTTGGTGCCTTCAGAGACGGCGTGTTTCGCTAATTCACCGGGCAAA 1947731 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || || || || || ||||| || || | ||| || |||||||| | | Sbjct 1947730 AGAAGACGGACAGCTGTTTGGATTTCTCGACTCGTGATGGTAGAACGCTTGTTGTAGTGA 1947671 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || || || || || | ||||| |||| || |||||||| || ||||||| Sbjct 1947670 GCAAGACGAGAGGATTCTCCAGCAATGCGCTCGAAAATATCGTTGACGAAGCTGTTCATG 1947611 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 |||| ||| | ||| ||| || || |||||| || || ||||| ||||| ||||| Sbjct 1947610 ATCGTCATGGCTTTCGAGGAAATACCAGTGTCGGGATGGACTTGCTTCAGCACTTTGTA 1947552 >seq211 Length=70595 Score = 102 bits (112), Expect = 1e-15 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || || || || || ||||| |||||| ||| || ||| Sbjct 7286 TGTACTTGGTAACTGCCTTTGTGCCTTCAGAAACAGCGTGTTTGGCCAATTCACCAGGCA 7345 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || || || || ||||| |||||| | ||| || | |||||| | Sbjct 7346 GAAGCAGACGGACAGCCGTTTGGATTTCGCGGCTCGTGATGGTAGATCTCTTGTTGTAGT 7405 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || || || | ||||| || | ||||||||||| || ||||| Sbjct 7406 GAGCAAGACGAGAGGATTCTCCAGCAATGCGCTCAAAAATGTCGTTGACGAAGCTGTTCA 7465 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||| ||| | |||| |||||||| ||| || || |||||||| | ||| |||| Sbjct 7466 TGATCGTCATGGCTTTGGAAGAGATGCCAGTGTCAGGATGGACCTGCTTCAACACTTTGT 7525 Query 1485710 A 1485710 | Sbjct 7526 A 7526 >seq2580 Length=1487765 Score = 95.1 bits (104), Expect = 2e-13 Identities = 158/219 (72%), Gaps = 11/219 (5%) Strand=Plus/Minus Query 653657 GGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTG-GGCAGCG--TGCGCTCG 653713 ||||||||| | | ||||| ||||| || |||||||| ||| || | | | | || Sbjct 176028 GGCGACAAATTCGCCTCGCGTCACGGACAGAAGGGCAC-GTGCGGTATCCAATACCGTCA 175970 Query 653714 ACCGAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCG 653773 | ||||| ||||| | || | ||| || || ||||||||| ||||||||||| Sbjct 175969 A--GAGGACATGCCTT--TCACTT-GCGAAGGATTAACTCCCGACATCATCATCAACCCG 175915 Query 653774 CACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTCCTGGGCAAGGTG 653833 |||||||||||||| ||||||||||| ||| | |||| || ||| | |||||| || Sbjct 175914 CACGCCATCCCGTCCCGCATGACCATCGGCCATTTGATCGAATGCCTTCAGGGCAAAGT- 175856 Query 653834 GCCTGC-CGCGAGGGCTACGTGGGCGACGGCACCCCGTT 653871 | |||| | ||||| | | ||||||| ||| || || Sbjct 175855 GTCTGCAAACAAGGGCGAAATAGGCGACGCCACTCCATT 175817 >seq14755 Length=1354 Score = 93.3 bits (102), Expect = 7e-13 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || || || || || |||||| |||||| ||| ||| ||| Sbjct 202 TGTACTTAGTCACAGCCTTTGTGCCTTCAGATACTGCGTGCTTGGCCAATTCTCCGGGCA 261 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||| || || ||| | ||| || |||||||| | Sbjct 262 GAAGGAGACGGACAGCTGTCTGAATTTCCCGGCTCGTGATGGTAGAACGCTTGTTGTAGT 321 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || | || | || || |||| ||||| ||||| || ||||| Sbjct 322 GGGCAAGACGAGAAGATTCTCCAGCAATACGTTCGAAAATGTCATTGACGAAACTGTTCA 381 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||| ||| | ||| || ||||| ||||||||| |||||||| | ||| |||| Sbjct 382 TGATCGTCATAGCTTTCGAAGAAATGCCAGTGTCGGGGTGGACCTGCTTTAACACTTTGT 441 Query 1485710 A 1485710 | Sbjct 442 A 442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913182706268639