Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1253 102 5e-17 seq2866 87.8 1e-12 >seq1253 Length=553177 Score = 102 bits (112), Expect = 5e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| || | | ||| |||| |||| ||||||||||| || Sbjct 470169 CTCCTTCTGAATGTTGTAGTCAGACAACGTACGCCCATCTTCCAACTGCTTTCCGGCAAA 470110 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || ||||| ||| | || | ||||||||||| | || || ||| ||| Sbjct 470109 GATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGAATCTTAGCTTTTACGTT 470050 Query 34906 TGCTATCG-ATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 | |||| | || | ||| || || || | || ||||| || ||||| | ||| || | Sbjct 470049 TTCTATGGTATCCGATGG-TTCAACTTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCA 469991 Query 34965 CAAAGATCTGCAT 34977 | ||||| ||||| Sbjct 469990 CGAAGATTTGCAT 469978 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| || ||||||||||| || || | | || |||| |||| ||||||||||| || Sbjct 468751 CTCTTTTTGAATGTTATAATCGGACAAAGTACGACCATCTTCCAACTGCTTTCCGGCAAA 468692 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || ||||| ||| | || | || |||||||| | |||||| ||||| Sbjct 468691 GATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTGACATT 468632 Query 34906 TGCTATCG-ATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 | | || | || | ||| ||| || |||| ||| || || || || || | || || | Sbjct 468631 TTCGATGGTATCCGATGG-CTCAACCTCAAGGGTAATAGTTTTCCCGGTTAAAGTTTTCA 468573 Query 34965 CAAAGATCTGCAT 34977 | ||||||||||| Sbjct 468572 CGAAGATCTGCAT 468560 >seq2866 Length=178446 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||||||||| || || |||| |||| | || ||||| || || || || || ||| Sbjct 176660 TTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAATC 176719 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 | ||||||||||| | || | || |||||||| | ||||| || || | | Sbjct 176720 AAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTTCG 176779 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || | ||| | ||| || |||| ||| |||||||| ||||| | ||||| || || Sbjct 176780 ATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGAAA 176839 Query 34970 ATCTGCAT 34977 |||||||| Sbjct 176840 ATCTGCAT 176847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325578477857819