Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26]
28,801 sequences; 129,543,483 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq1253 116 6e-21
>seq1253
Length=553177
Score = 116 bits (128), Expect = 6e-21
Identities = 154/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | ||||| ||||| || ||||| ||||| |||| || || | |
Sbjct 468561 TGCAGATCTTCGTGAAAACTTTAACCGGGAAAACTATTACCCTTGAGGTTGAGCCATCGG 468620
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || ||||||| || ||||| ||| || ||||||||||| || ||||| |
Sbjct 468621 ATACCATCGAAAATGTCAAGGCAAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAGC 468680
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| | ||||| ||||| || || || || || ||| | | || || | |||||||| |
Sbjct 468681 AGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGTACTTTGTCCGATTATAACA 468740
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245
| |||||||| |||||| | || ||||| ||||
Sbjct 468741 TTCAAAAAGAGTCGACTCTTCACTTAGTTCTACG 468774
Score = 102 bits (112), Expect = 1e-16
Identities = 164/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | || || || || || ||||| || || | || || |||| | |
Sbjct 470207 TGCAGATCTTTGTCAAGACGTTGACTGGGAAAACTATCACGCTCGAAGTTGAACCTTCAG 470266
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || || ||||||| || |||||| ||| ||| ||||| ||||| ||||| || |
Sbjct 470267 ACACAATCGAAAATGTTAAGGCTAAAATCCAAGATAAGGAAGGTATTCCTCCCGACCAGC 470326
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | || || || || || || || | || ||| | | ||| | |||| ||||| |
Sbjct 470327 AACGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGTACGCTTTCAGACTATAACA 470386
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATA 146267
| ||||||||||| || | |||||||| ||||| | | ||||| | ||||||
Sbjct 470387 TTCAAAAAGAATCTACCCTTCATTTAGTTTTACGTCTTCGTGGAGGAATTTAAATA 470442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 785883370268920
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |