Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1253 163 2e-35 seq2866 123 2e-23 >seq1253 Length=553177 Score = 163 bits (180), Expect = 2e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | ||||| |||||||| || || ||||| || || ||||| ||||| | Sbjct 468184 TCCTCCTCTGAGGCGCAGAACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGA 468125 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || || || ||||||||| | ||||| | ||||||||| || || Sbjct 468124 CAAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGG 468065 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||| || || ||||| ||| || | || ||| | || | |||||||||| | || | Sbjct 468064 AATACCTTCCTTATCTTG-AATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAA 468006 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | |||||||| || ||||||||||| || || || ||||| ||||||||||| Sbjct 468005 CCTCAAGAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATCTGCATTTT 467954 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||| | || |||||||| || |||||||||||||||||||| || | Sbjct 470433 TCCTCCACGAAGACGTAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGA 470374 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || ||| ||| || || || ||||| || | |||| | |||||| || || || Sbjct 470373 AAGCGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGG 470314 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||| || || ||||| | ||| || ||| |||| | ||||| ||| |||| || Sbjct 470313 AATACCTTCCTTATCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAAC 470254 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || |||||||| ||||| || || || ||||| |||||||| Sbjct 470253 TTCGAGCGTGATAGTTTTCCCAGTCAACGTCTTGACAAAGATCTGCAT 470206 Score = 132 bits (146), Expect = 4e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || || ||||| || || |||||||||||||||||||| | | || ||| Sbjct 468775 ACGTAGAACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGACAAAGTACGACC 468716 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || || ||| | || | | |||||||| || ||||| || || || Sbjct 468715 ATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTT 468656 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||||| |||||| |||| | || || || | || || ||||| || | Sbjct 468655 GTCTTG-AATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCAACCTCAAGGGTAA 468597 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||| || ||||| ||||| || || |||||||| Sbjct 468596 TAGTTTTCCCGGTTAAAGTTTTCACGAAGATCTGCAT 468560 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| ||||| ||||| |||||||||||||||| | || || Sbjct 469965 ACGTAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTATAATCCGACAACGTACGTCC 469906 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACC 29684 ||| || || || |||||||| | || | | ||||||||| ||||||||||| Sbjct 469905 ATCCTCTAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCGGGCGGAATACC 469852 Score = 87.8 bits (96), Expect = 1e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 29682 ACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTC 29741 ||| ||||||||||| | ||| |||||| |||| | ||||| ||| | || ||||| Sbjct 468289 ACCTTCTTTGTCTTGGATTTTCGCCTTGACATTTTCAATCGTGTCGGAAGGCTCCACTTC 468230 Query 29742 AAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | ||| ||||| || ||||| | |||||||||||| ||||||||| Sbjct 468229 CAAAGTGATAGTCTTTCCAGTCAGGGTTTTAACAAAGATCTGCATT 468184 >seq2866 Length=178446 Score = 123 bits (136), Expect = 2e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||| |||||||| ||||| | | ||||| || || || ||||| |||||| | | Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716 |||| | |||||| || || |||||||| || |||||||| | ||| || ||| ||| Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTT 176777 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | || |||||| | || || ||||| || || || || || ||||| || ||||| | Sbjct 176778 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGA 176837 Query 29777 ATATCTGCATTTT 29789 | ||||||||||| Sbjct 176838 AAATCTGCATTTT 176850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385083983365941