Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq1253 113 4e-20 seq16310 98.7 1e-15 seq2866 95.1 1e-14 >seq1253 Length=553177 Score = 113 bits (124), Expect = 4e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| ||||||||||||| |||||||||||||| ||||| || || | Sbjct 470432 CCTCCACGAAGACGTAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTC--TG 470375 Query 137245 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | | | ||| || || || || || || || |||||||||||||||| ||||||| Sbjct 470374 AAAGCGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAG 470315 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||| || || ||||| || | | ||| | ||||||| ||||| | Sbjct 470314 GAATACCTTCCTTATCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAA 470255 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| | || | || || || ||||| || || || || || |||||| Sbjct 470254 CTTCGAGCGTGATAGTTTTCCCAGTCAACGTCTTGACAAAGATCTGCATA 470205 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| | |||| ||| ||||| | || ||||| || || |||||||||||| | Sbjct 468183 CCTCCTCTGAGGCGCAGAACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGAC 468124 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | || || || || || |||||| |||||| |||||||||||| || || Sbjct 468123 AAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGGA 468064 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||| || || | | || | ||||| | || || || Sbjct 468063 ATACCTTCCTTATCTTGAATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAACC 468004 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | || ||||| |||||||| || || || || ||||| Sbjct 468003 TCAAGAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATCTGCAT 467957 >seq16310 Length=633 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| |||| |||||| || ||||||| ||||| |||||||| ||||| || || Sbjct 423 GCCTCCCCGTAGACGCAATACCAAATGAAGAGTAGACTCTTTTTGGATGTTATAGTCAGA 482 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || || | | |||||| ||||| || |||||| | || ||||| ||||||||||| || Sbjct 483 CAGCGTACGCCCGTCTTCTAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGATCGGGTGG 542 Query 137304 TATGCCT 137310 || ||| Sbjct 543 GATACCT 549 >seq2866 Length=178446 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 137222 CTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGA 137281 |||| || ||||||||||| | |||| |||||| || |||||||||||| | | Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 137282 TCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTT 137341 ||| ||||||||| |||||||| || ||||| ||||| ||||| || | | || Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTT 176777 Query 137342 CCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGA 137401 | | || || | || || || |||| || | ||||| || || ||||| || |||| Sbjct 176778 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGA 176837 Query 137402 ATATTTGCAT 137411 | || ||||| Sbjct 176838 AAATCTGCAT 176847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488368118053200